Protein–RNA interactions for Protein: A0A0B4J275

TRAV17, T-cell receptor alpha variable 17 (Fragment), humanhuman

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV17A0A0B4J275 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV17A0A0B4J275 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV17A0A0B4J275 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
TRAV17A0A0B4J275 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 AC007563.2-201ENST00000447289 552 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 AC092647.4-201ENST00000457211 535 ntBASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 AC141257.4-201ENST00000634557 245 ntBASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 AC136944.6-201ENST00000634818 245 ntBASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
TRAV17A0A0B4J275 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 TCF3-203ENST00000395423 2779 ntTSL 5 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
TRAV17A0A0B4J275 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 FAM8A6P-201ENST00000407496 1135 ntBASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 YBX1P2-201ENST00000489612 999 ntBASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 LINC01465-201ENST00000408887 1940 ntBASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
TRAV17A0A0B4J275 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 AC073314.1-201ENST00000568729 2216 ntBASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 KRT8P41-201ENST00000533985 1514 ntBASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 GUK1-204ENST00000366721 689 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TSPY5P-201ENST00000426936 936 ntBASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
TRAV17A0A0B4J275 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
TRAV17A0A0B4J275 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms