Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 GTF2IP1-210ENST00000622829 3605 ntTSL 1 (best) BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC26.19■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 KRT17P2-201ENST00000300992 1314 ntBASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MUC1-204ENST00000343256 648 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 HTRA4-201ENST00000302495 2095 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MCC-208ENST00000514701 2855 ntTSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC26.17■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AP2M1-203ENST00000411763 1577 ntTSL 5 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 THEM4-205ENST00000489410 643 ntTSL 2 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZNF692-202ENST00000366471 1710 ntAPPRIS ALT2 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC060766.5-201ENST00000590539 871 ntBASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC26.15■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AL390719.1-204ENST00000412397 1219 ntBASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 AC008403.3-201ENST00000598924 454 ntBASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 HLA-B-256ENST00000639848 1089 ntBASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC26.14■■□□□ 1.78
SENP3-EIF4A1A0A087X0R7 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC26.14■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC26.14■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.77
SENP3-EIF4A1A0A087X0R7 TP73-202ENST00000354437 2140 ntTSL 5 BASIC26.14■■□□□ 1.77
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms