Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC007382.1-201ENST00000624376 2618 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 OR1E1-201ENST00000322608 1307 ntAPPRIS P1 BASIC5.67□□□□□ -1.5
USP39Q53GS9 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 NOSTRIN-207ENST00000445023 1569 ntTSL 1 (best) BASIC5.67□□□□□ -1.5
USP39Q53GS9 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC5.67□□□□□ -1.5
USP39Q53GS9 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.67□□□□□ -1.5
USP39Q53GS9 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.67□□□□□ -1.5
USP39Q53GS9 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 NFKBIZ-203ENST00000394054 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 C1orf112-201ENST00000286031 4355 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC006288.1-201ENST00000565320 1463 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 HSPD1P11-201ENST00000508643 1702 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 CEACAM1-201ENST00000161559 3519 ntAPPRIS P3 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 Y_RNA.41-201ENST00000362646 102 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 RNA5SP30-201ENST00000365552 115 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP39Q53GS9 MIR550A3-201ENST00000390735 95 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 MTCO1P56-201ENST00000401674 224 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 SEPT7P8-201ENST00000413308 775 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 RPS7P9-201ENST00000414704 586 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 NPM1P11-201ENST00000417106 855 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AL139008.2-201ENST00000420315 395 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 OFD1P13Y-201ENST00000431179 1232 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC007563.3-201ENST00000433233 371 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 MTCO1P52-201ENST00000433928 531 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AL591503.2-201ENST00000442314 1005 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 FAR2P1-206ENST00000449736 709 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 VDAC2P4-201ENST00000452925 711 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 RPL12P39-201ENST00000455456 496 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 LINC00888-204ENST00000487386 421 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 PDCL3P4-201ENST00000489621 720 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 RN7SL447P-201ENST00000494711 245 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 RN7SL808P-201ENST00000496066 299 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 NDUFA5P2-201ENST00000519723 344 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 ASB8-202ENST00000535055 657 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 TRPT1-216ENST00000546133 382 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 OR11H3P-201ENST00000554547 982 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC016987.1-201ENST00000558587 499 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AL390726.5-202ENST00000564800 256 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC022211.1-201ENST00000579554 717 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC011824.3-201ENST00000585093 563 ntTSL 4 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AC004448.4-204ENST00000585389 743 ntTSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 VN1R82P-201ENST00000601481 356 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AL133481.2-203ENST00000607558 139 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 MIR6748-201ENST00000610433 71 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 TUG1_1.1-201ENST00000610654 145 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AC138749.5-201ENST00000611461 208 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 AL031658.2-201ENST00000616850 651 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 CT45A10-202ENST00000617981 578 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 AL356121.2-201ENST00000624715 780 ntBASIC5.66□□□□□ -1.5
USP39Q53GS9 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 MAK-203ENST00000474039 3859 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 ETV1-208ENST00000420159 6231 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.5
USP39Q53GS9 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 SEMA6D-210ENST00000558816 4419 ntTSL 5 BASIC5.66□□□□□ -1.5
USP39Q53GS9 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.66□□□□□ -1.5
USP39Q53GS9 AL133268.1-201ENST00000405676 1401 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 CD164-207ENST00000504373 1402 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 AL359715.4-201ENST00000606629 1436 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC004520.1-201ENST00000608362 1413 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC131971.1-201ENST00000332881 1482 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 LINC00906-206ENST00000589921 3444 ntTSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC5.65□□□□□ -1.5
USP39Q53GS9 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 RNU6-697P-201ENST00000363348 107 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.65□□□□□ -1.5
USP39Q53GS9 RNU6-157P-201ENST00000383957 107 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 RNU6-729P-201ENST00000384399 107 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 MIR551A-201ENST00000385042 96 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.65□□□□□ -1.5
USP39Q53GS9 Y_RNA.625-201ENST00000411256 107 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 MTND1P21-201ENST00000412991 285 ntBASIC5.65□□□□□ -1.5
USP39Q53GS9 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.65□□□□□ -1.5
USP39Q53GS9 LINC01507-201ENST00000417801 446 ntTSL 5 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AL451127.1-201ENST00000422909 624 ntTSL 3 BASIC5.65□□□□□ -1.5
USP39Q53GS9 AC012519.1-201ENST00000424588 610 ntBASIC5.65□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 123.9 ms