Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 RSF1-204ENST00000480887 5318 ntAPPRIS ALT2 TSL 1 (best) BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 C1orf146-201ENST00000370373 871 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC091959.2-201ENST00000477363 321 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 SNORA31.9-201ENST00000516429 84 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC067904.2-201ENST00000517322 1283 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 MIR4286-201ENST00000580651 93 ntBASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 AC084816.1-212ENST00000625240 1114 ntTSL 5 BASIC8.64□□□□□ -1.03
SHROOM4Q9ULL8 LINC00690-201ENST00000429949 1365 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 SGO1-202ENST00000306698 1531 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 CUL4B-204ENST00000404115 3264 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 LINC01951-201ENST00000377300 1925 ntTSL 2 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 SNORA62.3-201ENST00000365110 153 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-1320P-201ENST00000390838 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-1269P-201ENST00000391139 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC104333.2-201ENST00000422630 192 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-599P-201ENST00000459383 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-1193P-201ENST00000459461 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC123768.1-201ENST00000486285 432 ntTSL 3 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC108157.1-201ENST00000510511 539 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC108064.1-201ENST00000513791 460 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC091979.2-201ENST00000607514 214 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC104307.1-201ENST00000616142 196 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-368P-201ENST00000620928 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-538P-201ENST00000622329 107 ntBASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 TAF9-205ENST00000506736 1331 ntAPPRIS P2 TSL 1 (best) BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC8.63□□□□□ -1.03
SHROOM4Q9ULL8 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC005261.4-201ENST00000600047 1385 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 ST7-212ENST00000422922 1887 ntTSL 5 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AL445487.1-201ENST00000415694 1580 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC108467.2-201ENST00000617640 1597 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 OR5P1P-201ENST00000299512 925 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 RN7SKP202-201ENST00000410439 330 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AL136231.1-201ENST00000429407 730 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 SCP2-206ENST00000430330 938 ntTSL 2 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 RPL7P33-201ENST00000444159 742 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 RNU6-889P-201ENST00000517189 103 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 MIR670HG-201ENST00000533531 897 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC127024.5-201ENST00000580085 462 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AL161756.2-201ENST00000604597 246 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 AC019131.2-201ENST00000609071 870 ntBASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC8.62□□□□□ -1.03
SHROOM4Q9ULL8 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 SNORA9-201ENST00000384215 133 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 MIR449B-201ENST00000384995 97 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 EIF4EBP2P3-201ENST00000403144 334 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 SNRPFP1-201ENST00000414761 252 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC010163.2-201ENST00000416341 381 ntTSL 2 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 EIF4HP2-201ENST00000424380 563 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 CKS1BP6-201ENST00000424932 240 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC234781.1-201ENST00000444722 459 ntTSL 3 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC009963.4-201ENST00000448535 339 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 APOA2-207ENST00000470459 416 ntTSL 5 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 RN7SL132P-201ENST00000478131 296 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 F11-205ENST00000492972 1204 ntTSL 2 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 LINC01455-201ENST00000503167 561 ntTSL 4 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC095056.1-201ENST00000503918 425 ntTSL 3 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC022784.7-201ENST00000520017 651 ntTSL 3 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC024220.1-201ENST00000603675 484 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AC005021.1-201ENST00000608730 355 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 MIR8059-201ENST00000620427 81 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 AL356863.1-201ENST00000623378 1080 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 DDX18P5-201ENST00000534547 1306 ntBASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 SLC26A7-210ENST00000617233 5257 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 EXPH5-201ENST00000265843 10187 ntAPPRIS P3 TSL 1 (best) BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 GHR-207ENST00000537449 4419 ntAPPRIS P1 TSL 5 BASIC8.61□□□□□ -1.03
SHROOM4Q9ULL8 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC8.6□□□□□ -1.03
SHROOM4Q9ULL8 ANK3-202ENST00000355288 3811 ntTSL 1 (best) BASIC8.6□□□□□ -1.03
SHROOM4Q9ULL8 MIR372-201ENST00000362225 67 ntBASIC8.6□□□□□ -1.03
SHROOM4Q9ULL8 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC8.6□□□□□ -1.03
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms