Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 OR5AK3P-201ENST00000527486 1297 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 HMGN2P6-201ENST00000551091 273 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC010551.2-201ENST00000569200 416 ntTSL 3 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 LINC02185-202ENST00000576797 568 ntTSL 3 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AP005433.1-202ENST00000580845 521 ntTSL 4 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC090912.2-203ENST00000581177 477 ntTSL 3 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 LINC01900-202ENST00000584898 603 ntTSL 5 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC105254.2-201ENST00000603636 436 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC009163.6-201ENST00000612367 342 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC084824.4-201ENST00000620106 731 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC015804.1-201ENST00000622935 435 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 AC083865.1-201ENST00000636634 831 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 OR52B5P-202ENST00000641118 1110 ntBASIC4.27□□□□□ -1.73
NKX3-1Q99801 ZNF254-202ENST00000357002 3967 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.27□□□□□ -1.73
NKX3-1Q99801 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
NKX3-1Q99801 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 SLC9B1-202ENST00000394789 1735 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 IFI44L-201ENST00000370751 5874 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 CDKL3-210ENST00000523832 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 HSPD1P14-201ENST00000432666 1618 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 CSN3-201ENST00000304954 836 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 OR8K5-201ENST00000313447 924 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AL592291.1-201ENST00000403830 352 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AL359643.1-201ENST00000404109 423 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC096533.1-201ENST00000411645 353 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 LINC01945-201ENST00000419784 840 ntTSL 2 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 TCEA1P2-201ENST00000420496 906 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 CKS1BP6-201ENST00000424932 240 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 HNRNPA3P4-201ENST00000427514 803 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 MTND2P2-201ENST00000434633 945 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 RPS29P9-201ENST00000440360 171 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 CEACAMP7-201ENST00000444105 496 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AL591363.1-201ENST00000450091 483 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 RN7SL222P-201ENST00000476452 299 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 RPS27AP16-201ENST00000492222 470 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 RN7SL441P-201ENST00000492388 296 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 LINC00903-201ENST00000497854 223 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 CRISP1-203ENST00000505118 1296 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 RFPL4AP5-201ENST00000514977 504 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 RN7SKP66-201ENST00000516681 231 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC073172.2-201ENST00000527770 571 ntTSL 4 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC022832.1-201ENST00000530718 645 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC087894.1-201ENST00000538359 518 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 LINC02186-201ENST00000575767 885 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AP000919.1-202ENST00000581139 1264 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 OR5H6-201ENST00000615035 1113 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC011472.4-201ENST00000615848 491 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC090510.2-201ENST00000617465 629 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AL022401.1-201ENST00000619498 108 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC022106.2-201ENST00000620114 757 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC073342.3-201ENST00000624211 193 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC007389.5-201ENST00000629214 744 ntTSL 5 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 CASC19-222ENST00000641321 1173 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 OR5H6-202ENST00000641416 1032 ntAPPRIS P1 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 VN2R3P-201ENST00000422626 1412 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 LINC00862-204ENST00000637098 1400 ntTSL 5 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 MTRR-202ENST00000440940 3215 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 PANK1-203ENST00000342512 2703 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 MYB-239ENST00000534121 2238 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 HSPD1P11-201ENST00000508643 1702 ntBASIC4.26□□□□□ -1.73
NKX3-1Q99801 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC4.26□□□□□ -1.73
NKX3-1Q99801 C6-201ENST00000263413 3661 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.26□□□□□ -1.73
NKX3-1Q99801 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 HSPA8P18-201ENST00000439846 1928 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.25□□□□□ -1.73
NKX3-1Q99801 CASC19-204ENST00000641001 2055 ntBASIC4.25□□□□□ -1.73
NKX3-1Q99801 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.25□□□□□ -1.73
NKX3-1Q99801 CYLD-212ENST00000568704 3292 ntTSL 5 BASIC4.25□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms