Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MS4A1-201ENST00000345732 3331 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 OR51A7-201ENST00000359350 1048 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AC021876.1-201ENST00000425959 359 ntBASIC4.03□□□□□ -1.76
VPS13AQ96RL7 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AC127537.2-201ENST00000439258 465 ntBASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AC005972.3-201ENST00000606304 481 ntBASIC4.03□□□□□ -1.76
VPS13AQ96RL7 LAMA2-206ENST00000618192 9687 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 DAAM1-202ENST00000395125 5806 ntAPPRIS P3 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 ABL2-201ENST00000344730 6910 ntAPPRIS ALT2 TSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 MAPK10-303ENST00000641324 3959 ntBASIC4.03□□□□□ -1.76
VPS13AQ96RL7 KCNU1-201ENST00000399881 3695 ntAPPRIS P1 TSL 2 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC4.03□□□□□ -1.76
VPS13AQ96RL7 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC4.03□□□□□ -1.77
VPS13AQ96RL7 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 CCAT2-201ENST00000630920 1752 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 EIF4HP2-201ENST00000424380 563 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AL138759.1-201ENST00000432120 645 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC104564.2-201ENST00000581240 270 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 PRELID3BP3-201ENST00000584963 545 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC012493.2-201ENST00000595083 291 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC015726.1-201ENST00000602353 681 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AL008729.1-201ENST00000606627 553 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 FAN1-202ENST00000561594 2738 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 SAMD9L-202ENST00000411955 5831 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 ADAMTS6-203ENST00000381055 7311 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 ANKRD36P1-201ENST00000344424 659 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 RN7SKP167-201ENST00000411047 285 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AL358472.1-201ENST00000431295 329 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 HSPD1P21-201ENST00000436541 245 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 MTOR-AS1-202ENST00000445982 705 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 RPL7P22-201ENST00000466005 733 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC025518.1-201ENST00000479856 347 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 LINC02000-201ENST00000483245 640 ntTSL 2 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 HIGD1AP18-201ENST00000520730 278 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 CR392039.4-201ENST00000624968 501 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 PTPRB-201ENST00000261266 6110 ntAPPRIS ALT2 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 DOPEY1-201ENST00000237163 7995 ntAPPRIS ALT1 TSL 5 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 NCKAP1L-201ENST00000293373 9016 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC010132.1-201ENST00000433315 561 ntTSL 4 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AL591503.2-201ENST00000442314 1005 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 AC016553.1-201ENST00000513283 249 ntTSL 3 BASIC4.02□□□□□ -1.77
VPS13AQ96RL7 DEFB109D-201ENST00000529497 240 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 EIF4BP1-201ENST00000554881 351 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 OR8G7P-201ENST00000616658 848 ntBASIC4.02□□□□□ -1.77
VPS13AQ96RL7 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 AL355488.2-201ENST00000609909 2850 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 LPA-201ENST00000316300 6414 ntAPPRIS P1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 ANLN-202ENST00000396068 4661 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 VPS8-207ENST00000436792 5011 ntAPPRIS ALT1 TSL 2 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 PLCE1-203ENST00000371385 6500 ntAPPRIS ALT2 TSL 5 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 RTL9-201ENST00000465301 5426 ntAPPRIS P2 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 OR10J1-203ENST00000642080 3503 ntAPPRIS P1 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 FAM24A-201ENST00000368894 596 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 IARS-201ENST00000375627 697 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 DPRX-201ENST00000376650 648 ntAPPRIS P1 TSL 3 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 ESD-201ENST00000378697 1079 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 SNORD3H-201ENST00000384486 214 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 TRIM60P17-201ENST00000415181 719 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 RPS4XP4-201ENST00000443195 763 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 AC097173.2-201ENST00000518701 474 ntTSL 3 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 DNAH2-201ENST00000389173 13505 ntAPPRIS P1 TSL 2 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 SPZ1-201ENST00000296739 1868 ntAPPRIS P2 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 ATF2-221ENST00000538946 1325 ntTSL 5 BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 AL359922.3-201ENST00000624779 1670 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 MS4A14-203ENST00000395005 2813 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC4.01□□□□□ -1.77
VPS13AQ96RL7 AL672167.1-204ENST00000641875 3017 ntBASIC4.01□□□□□ -1.77
VPS13AQ96RL7 RNU6ATAC10P-201ENST00000408635 111 ntBASIC4.01□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 83.1 ms