Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 MFSD8-213ENST00000641134 1327 ntBASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 ACE2-202ENST00000427411 3507 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 IGF2BP3-218ENST00000619562 2126 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 SMAD4-202ENST00000398417 8495 ntAPPRIS P1 TSL 5 BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.9□□□□□ -1.63
ZNF549Q6P9A3 RGS1-201ENST00000367459 1405 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RARSP1-201ENST00000542842 1418 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 PTPRD-203ENST00000381196 9911 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 PSG11-201ENST00000306322 990 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 MTHFD2P5-201ENST00000320415 844 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC007068.1-201ENST00000396690 844 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AL357515.1-201ENST00000402967 542 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LINC00161-201ENST00000412526 870 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 TMBIM7P-201ENST00000418074 855 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC090960.1-201ENST00000421072 306 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 MTCO1P43-201ENST00000431831 488 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 MTCO3P5-201ENST00000433620 714 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 ZDHHC20P1-204ENST00000435787 423 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC015971.1-202ENST00000439077 514 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC000111.2-201ENST00000448200 210 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 ZNF886P-201ENST00000450781 723 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 DAP3-209ENST00000465375 729 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RAP1BP2-201ENST00000478270 544 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 STRADBP1-201ENST00000478954 1281 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 BET1P1-201ENST00000482276 359 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RPL21P47-201ENST00000483696 477 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RN7SL244P-201ENST00000493405 297 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC097534.1-201ENST00000507803 521 ntTSL 4 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 HMGB3P16-201ENST00000508037 287 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC133963.2-201ENST00000513686 578 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RNA5SP34-201ENST00000516887 130 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LINC01609-201ENST00000519506 424 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 PDZD9-203ENST00000537222 1068 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC137590.1-201ENST00000542422 495 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 RN7SL435P-201ENST00000584418 282 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 MEMO1P5-201ENST00000604810 406 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AC093799.2-201ENST00000610062 578 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 VN1R9P-201ENST00000614184 867 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AL034549.1-201ENST00000615120 578 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 USP8-204ENST00000425032 3559 ntTSL 2 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 LINC00507-201ENST00000540882 1935 ntTSL 5 BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 ASTE1-208ENST00000514044 2504 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 CSMD3-201ENST00000297405 13212 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 AL603750.1-201ENST00000624216 1717 ntBASIC4.89□□□□□ -1.63
ZNF549Q6P9A3 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 STX3-208ENST00000641815 3236 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 SCN3A-202ENST00000360093 9123 ntAPPRIS ALT1 TSL 5 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 SCARNA15-201ENST00000607520 4325 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 PALMD-203ENST00000605497 1942 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 RAD1P1-201ENST00000231383 813 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AC008549.2-201ENST00000333482 706 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 Y_RNA.169-201ENST00000363745 96 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 HTN3-201ENST00000381057 493 ntAPPRIS ALT2 TSL 2 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AL078599.1-201ENST00000402075 293 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 GJA6P-201ENST00000415117 1042 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 OR2AH1P-201ENST00000425717 928 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AC093422.3-201ENST00000428506 305 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 MTND1P20-201ENST00000430341 950 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 USP9YP14-201ENST00000430663 563 ntBASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AL590652.1-201ENST00000453790 850 ntTSL 3 BASIC4.88□□□□□ -1.63
ZNF549Q6P9A3 AGBL4-IT1-201ENST00000457061 514 ntTSL 3 BASIC4.88□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms