Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RNA5SP28-201ENST00000363841 119 ntBASIC4.23□□□□□ -1.73
CDX1P47902 CDC123-202ENST00000378900 933 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 SNORA51.12-201ENST00000384448 134 ntBASIC4.23□□□□□ -1.73
CDX1P47902 MIR223-201ENST00000385204 110 ntBASIC4.23□□□□□ -1.73
CDX1P47902 RNU1-77P-201ENST00000390868 162 ntBASIC4.23□□□□□ -1.73
CDX1P47902 RNU6-1000P-201ENST00000391066 106 ntBASIC4.23□□□□□ -1.73
CDX1P47902 MIR1178-201ENST00000408396 91 ntBASIC4.23□□□□□ -1.73
CDX1P47902 RNA5SP146-201ENST00000410743 123 ntBASIC4.23□□□□□ -1.73
CDX1P47902 C9orf57-202ENST00000424431 1297 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 AC115285.1-201ENST00000424879 736 ntBASIC4.23□□□□□ -1.73
CDX1P47902 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 RPS26P40-201ENST00000435209 294 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC002542.1-201ENST00000440683 193 ntBASIC4.23□□□□□ -1.73
CDX1P47902 KRTAP21-3-201ENST00000444335 253 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDX1P47902 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 AL590764.1-201ENST00000450860 726 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 AZGP1P2-201ENST00000454506 345 ntBASIC4.23□□□□□ -1.73
CDX1P47902 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDX1P47902 AC011037.1-201ENST00000483964 558 ntBASIC4.23□□□□□ -1.73
CDX1P47902 LINC02325-201ENST00000499910 1115 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 AC008638.1-201ENST00000506035 866 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 RPL7L1P13-201ENST00000511702 739 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC008494.2-201ENST00000514544 370 ntBASIC4.23□□□□□ -1.73
CDX1P47902 PRELID3BP4-201ENST00000515476 571 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 RPL26L1-203ENST00000519239 679 ntAPPRIS P1 TSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 HMGB1P40-201ENST00000525121 540 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 OR8G3P-201ENST00000533406 921 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC4.23□□□□□ -1.73
CDX1P47902 AC024909.1-201ENST00000549278 599 ntTSL 4 BASIC4.23□□□□□ -1.73
CDX1P47902 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 AC023908.1-201ENST00000559899 567 ntTSL 4 BASIC4.23□□□□□ -1.73
CDX1P47902 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 AC005341.1-201ENST00000571086 708 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 MIR1269B-201ENST00000580405 75 ntBASIC4.23□□□□□ -1.73
CDX1P47902 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.23□□□□□ -1.73
CDX1P47902 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.23□□□□□ -1.73
CDX1P47902 XIST-210ENST00000602863 775 ntTSL 3 BASIC4.23□□□□□ -1.73
CDX1P47902 AC015849.3-201ENST00000603981 488 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 AL158196.1-201ENST00000616786 434 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC009237.17-201ENST00000618111 748 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AL512427.1-201ENST00000618593 349 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC018926.3-201ENST00000618841 406 ntBASIC4.23□□□□□ -1.73
CDX1P47902 Metazoa_SRP.179-201ENST00000619020 241 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC009093.5-201ENST00000620963 359 ntTSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 ST6GALNAC3-203ENST00000621530 617 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 AC126544.2-201ENST00000625174 749 ntBASIC4.23□□□□□ -1.73
CDX1P47902 AC136428.4-201ENST00000634254 1155 ntBASIC4.23□□□□□ -1.73
CDX1P47902 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 PSG6-202ENST00000292125 1391 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 AC093535.2-201ENST00000624769 2326 ntBASIC4.23□□□□□ -1.73
CDX1P47902 OR2J3-202ENST00000641151 3297 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDX1P47902 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
CDX1P47902 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 CARF-208ENST00000428585 2513 ntTSL 2 BASIC4.23□□□□□ -1.73
CDX1P47902 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
CDX1P47902 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
CDX1P47902 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 AC068870.1-201ENST00000563737 2455 ntBASIC4.22□□□□□ -1.73
CDX1P47902 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 AL590763.1-201ENST00000398297 1545 ntBASIC4.22□□□□□ -1.73
CDX1P47902 AC010132.3-201ENST00000442788 2430 ntAPPRIS P5 TSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 TEX35-202ENST00000367639 785 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 MIR620-201ENST00000385232 95 ntBASIC4.22□□□□□ -1.73
CDX1P47902 HNRNPDP2-201ENST00000406475 478 ntBASIC4.22□□□□□ -1.73
CDX1P47902 BTBD9-AS1-201ENST00000412822 560 ntTSL 2 BASIC4.22□□□□□ -1.73
CDX1P47902 LINC01709-201ENST00000415532 634 ntTSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 TTTY17A-201ENST00000416110 166 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.22□□□□□ -1.73
CDX1P47902 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 TTTY17C-201ENST00000421387 166 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 SRSF1P1-201ENST00000424058 520 ntBASIC4.22□□□□□ -1.73
CDX1P47902 AC093655.2-201ENST00000425735 631 ntBASIC4.22□□□□□ -1.73
CDX1P47902 RPL7P4-203ENST00000430239 730 ntBASIC4.22□□□□□ -1.73
CDX1P47902 FAM96AP1-201ENST00000430879 482 ntBASIC4.22□□□□□ -1.73
CDX1P47902 LINC02257-202ENST00000433576 720 ntTSL 5 BASIC4.22□□□□□ -1.73
CDX1P47902 RPS7P2-201ENST00000435134 607 ntBASIC4.22□□□□□ -1.73
CDX1P47902 AL627308.1-201ENST00000435693 821 ntBASIC4.22□□□□□ -1.73
CDX1P47902 AC000041.1-201ENST00000439655 175 ntBASIC4.22□□□□□ -1.73
CDX1P47902 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.22□□□□□ -1.73
CDX1P47902 TTTY17B-201ENST00000441906 166 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
CDX1P47902 AL162386.2-201ENST00000442428 457 ntTSL 3 BASIC4.22□□□□□ -1.73
CDX1P47902 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 101.4 ms