Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC5.47□□□□□ -1.53
COL18A1P39060 FLG-201ENST00000368799 12747 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL18A1P39060 LIG4-201ENST00000356922 4096 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
COL18A1P39060 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
COL18A1P39060 MKI67-201ENST00000368653 11417 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
COL18A1P39060 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.46□□□□□ -1.54
COL18A1P39060 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.54
COL18A1P39060 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC5.46□□□□□ -1.54
COL18A1P39060 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC5.46□□□□□ -1.54
COL18A1P39060 MTCO1P54-201ENST00000430139 712 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 AP000477.1-202ENST00000434859 847 ntTSL 3 BASIC5.46□□□□□ -1.54
COL18A1P39060 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC5.46□□□□□ -1.54
COL18A1P39060 RPL7P1-201ENST00000468161 747 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 RPL7P9-201ENST00000468715 747 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 ACTR3P3-201ENST00000480448 893 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 SCARNA14-201ENST00000516903 136 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 IGKV2D-19-201ENST00000523346 262 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 AP000619.3-201ENST00000535634 1127 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 PCLAF-203ENST00000558008 766 ntTSL 3 BASIC5.46□□□□□ -1.54
COL18A1P39060 AC012314.7-201ENST00000619693 93 ntBASIC5.46□□□□□ -1.54
COL18A1P39060 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC5.46□□□□□ -1.54
COL18A1P39060 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
COL18A1P39060 ZMYND11-202ENST00000381584 2709 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL18A1P39060 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
COL18A1P39060 LINC01013-205ENST00000458028 1345 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL18A1P39060 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC5.45□□□□□ -1.54
COL18A1P39060 RNA5SP399-201ENST00000364003 117 ntBASIC5.45□□□□□ -1.54
COL18A1P39060 AC104306.1-201ENST00000449702 371 ntBASIC5.45□□□□□ -1.54
COL18A1P39060 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.45□□□□□ -1.54
COL18A1P39060 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.45□□□□□ -1.54
COL18A1P39060 DLG2-207ENST00000398309 7890 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
COL18A1P39060 AL390036.1-202ENST00000634635 2439 ntTSL 5 BASIC5.45□□□□□ -1.54
COL18A1P39060 RALGAPB-202ENST00000397040 8435 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL18A1P39060 AL731532.2-201ENST00000623542 1953 ntBASIC5.45□□□□□ -1.54
COL18A1P39060 XCL1-201ENST00000367818 1367 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
COL18A1P39060 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
COL18A1P39060 LINS1-201ENST00000314742 4821 ntAPPRIS P1 TSL 5 BASIC5.45□□□□□ -1.54
COL18A1P39060 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.45□□□□□ -1.54
COL18A1P39060 HNMT-201ENST00000280096 504 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 MIR483-201ENST00000385070 76 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 RPS3AP12-201ENST00000443616 753 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 PAICSP4-201ENST00000517543 1253 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.44□□□□□ -1.54
COL18A1P39060 AC027455.1-201ENST00000574104 594 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 AC096577.2-201ENST00000611455 153 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 HSPD1P14-201ENST00000432666 1618 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.44□□□□□ -1.54
COL18A1P39060 NFIB-211ENST00000606230 2311 ntTSL 5 BASIC5.44□□□□□ -1.54
COL18A1P39060 MAPK10-286ENST00000641208 8747 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC5.44□□□□□ -1.54
COL18A1P39060 DRP2-204ENST00000538510 6852 ntAPPRIS P3 TSL 2 BASIC5.44□□□□□ -1.54
COL18A1P39060 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 RRP15-201ENST00000366932 7771 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 FAM230B-202ENST00000415704 396 ntTSL 3 BASIC5.44□□□□□ -1.54
COL18A1P39060 AL590006.1-201ENST00000417390 752 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 MAP1LC3BP1-201ENST00000417653 379 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 RPS27AP15-201ENST00000447672 466 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 AL365318.1-201ENST00000453128 705 ntTSL 3 BASIC5.44□□□□□ -1.54
COL18A1P39060 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC5.44□□□□□ -1.54
COL18A1P39060 AC022874.1-201ENST00000526382 550 ntTSL 3 BASIC5.44□□□□□ -1.54
COL18A1P39060 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC5.44□□□□□ -1.54
COL18A1P39060 AC027176.2-201ENST00000559166 746 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 AC016229.2-201ENST00000591331 417 ntTSL 2 BASIC5.44□□□□□ -1.54
COL18A1P39060 AL606490.9-201ENST00000603331 271 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 AL049634.3-201ENST00000604968 457 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 MIR6868-201ENST00000611215 58 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 ACSM3-201ENST00000289416 2845 ntAPPRIS P1 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 LRRC63-203ENST00000595396 2327 ntAPPRIS P2 TSL 5 BASIC5.44□□□□□ -1.54
COL18A1P39060 TLR8-202ENST00000311912 3367 ntAPPRIS P4 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.44□□□□□ -1.54
COL18A1P39060 AC032011.1-201ENST00000611703 1549 ntBASIC5.44□□□□□ -1.54
COL18A1P39060 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC5.43□□□□□ -1.54
COL18A1P39060 TBC1D5-201ENST00000253692 7854 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.43□□□□□ -1.54
COL18A1P39060 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 FASTKD2-201ENST00000236980 3188 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 C1orf105-203ENST00000367727 985 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 MIR7-3-201ENST00000384898 110 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 AC007066.1-201ENST00000392902 381 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 AL590704.1-201ENST00000402856 794 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC5.43□□□□□ -1.54
COL18A1P39060 KRR1P1-201ENST00000419430 803 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 HMGN2P31-201ENST00000432430 273 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC5.43□□□□□ -1.54
COL18A1P39060 AL672167.1-201ENST00000441381 464 ntTSL 3 BASIC5.43□□□□□ -1.54
COL18A1P39060 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.43□□□□□ -1.54
COL18A1P39060 AC110768.1-201ENST00000509222 400 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 AC090151.1-201ENST00000520784 730 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 MRPL51-207ENST00000543959 472 ntTSL 3 BASIC5.43□□□□□ -1.54
COL18A1P39060 SCN1A-217ENST00000637988 8562 ntAPPRIS P3 TSL 5 BASIC5.43□□□□□ -1.54
COL18A1P39060 AC006042.3-201ENST00000454684 1469 ntBASIC5.43□□□□□ -1.54
COL18A1P39060 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC5.43□□□□□ -1.54
COL18A1P39060 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.43□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 76.9 ms