Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC4.22□□□□□ -1.73
TNFP01375 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.22□□□□□ -1.73
TNFP01375 BNIP3P5-201ENST00000562290 498 ntBASIC4.22□□□□□ -1.73
TNFP01375 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.22□□□□□ -1.73
TNFP01375 AL591034.3-201ENST00000605511 685 ntBASIC4.22□□□□□ -1.73
TNFP01375 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC4.22□□□□□ -1.73
TNFP01375 FAM49B-229ENST00000615041 750 ntTSL 5 BASIC4.22□□□□□ -1.73
TNFP01375 AC112484.5-201ENST00000624189 228 ntBASIC4.22□□□□□ -1.73
TNFP01375 AC021242.1-201ENST00000507315 2035 ntBASIC4.22□□□□□ -1.73
TNFP01375 SCN1A-220ENST00000641603 12506 ntBASIC4.22□□□□□ -1.73
TNFP01375 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
TNFP01375 AL133243.3-201ENST00000617415 3004 ntBASIC4.21□□□□□ -1.73
TNFP01375 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
TNFP01375 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.21□□□□□ -1.73
TNFP01375 CACNB4-257ENST00000637547 7658 ntTSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 PTCD2-202ENST00000380639 11151 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 RNU1-94P-201ENST00000362627 173 ntBASIC4.21□□□□□ -1.74
TNFP01375 RNU4-44P-201ENST00000363050 141 ntBASIC4.21□□□□□ -1.74
TNFP01375 RNA5SP28-201ENST00000363841 119 ntBASIC4.21□□□□□ -1.74
TNFP01375 SNORA57.1-201ENST00000391227 145 ntBASIC4.21□□□□□ -1.74
TNFP01375 ATP5F1P2-201ENST00000398143 760 ntBASIC4.21□□□□□ -1.74
TNFP01375 AL583835.1-201ENST00000399570 407 ntBASIC4.21□□□□□ -1.74
TNFP01375 EIF4A1P3-201ENST00000411521 244 ntBASIC4.21□□□□□ -1.74
TNFP01375 AL117381.1-201ENST00000412972 374 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 AL589642.2-201ENST00000413291 839 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 OR13Z1P-201ENST00000416141 834 ntBASIC4.21□□□□□ -1.74
TNFP01375 XIST-201ENST00000416330 750 ntTSL 2 BASIC4.21□□□□□ -1.74
TNFP01375 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 AC092484.1-201ENST00000420548 833 ntTSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 COX6CP15-201ENST00000426313 211 ntBASIC4.21□□□□□ -1.74
TNFP01375 VDAC1P6-201ENST00000430062 855 ntBASIC4.21□□□□□ -1.74
TNFP01375 COX6B1P7-201ENST00000430845 235 ntBASIC4.21□□□□□ -1.74
TNFP01375 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 BTF3P10-201ENST00000433415 495 ntBASIC4.21□□□□□ -1.74
TNFP01375 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC4.21□□□□□ -1.74
TNFP01375 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 AC010884.1-201ENST00000456519 642 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 AC009446.1-202ENST00000521131 473 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 CYCSP28-201ENST00000534284 321 ntBASIC4.21□□□□□ -1.74
TNFP01375 SNHG1-208ENST00000538266 347 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 RPL7P50-201ENST00000600588 727 ntBASIC4.21□□□□□ -1.74
TNFP01375 AC067959.1-201ENST00000604334 379 ntBASIC4.21□□□□□ -1.74
TNFP01375 AL451049.1-201ENST00000608672 497 ntBASIC4.21□□□□□ -1.74
TNFP01375 AC015871.5-202ENST00000623252 701 ntBASIC4.21□□□□□ -1.74
TNFP01375 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.21□□□□□ -1.74
TNFP01375 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 DNAJC9-AS1-204ENST00000440197 2865 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 SYNE2-203ENST00000357395 21555 ntTSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 TFPI-203ENST00000392365 3649 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC4.21□□□□□ -1.74
TNFP01375 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
TNFP01375 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFP01375 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
TNFP01375 AC083843.3-201ENST00000623679 2186 ntBASIC4.2□□□□□ -1.74
TNFP01375 CASC19-204ENST00000641001 2055 ntBASIC4.2□□□□□ -1.74
TNFP01375 TTC39DP-201ENST00000416781 1688 ntBASIC4.2□□□□□ -1.74
TNFP01375 OR5L2-201ENST00000378397 936 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
TNFP01375 MT-RNR1-201ENST00000389680 954 ntBASIC4.2□□□□□ -1.74
TNFP01375 RPS27AP11-201ENST00000402798 447 ntBASIC4.2□□□□□ -1.74
TNFP01375 AC007557.4-201ENST00000421907 430 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFP01375 AL445433.1-201ENST00000457507 257 ntBASIC4.2□□□□□ -1.74
TNFP01375 AC099522.1-202ENST00000514718 367 ntBASIC4.2□□□□□ -1.74
TNFP01375 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFP01375 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.2□□□□□ -1.74
TNFP01375 ARL6IP1P1-201ENST00000545836 610 ntBASIC4.2□□□□□ -1.74
TNFP01375 VPS29-210ENST00000552130 1057 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFP01375 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC4.2□□□□□ -1.74
TNFP01375 RPL23AP97-201ENST00000568955 471 ntBASIC4.2□□□□□ -1.74
TNFP01375 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFP01375 VN1R85P-201ENST00000601587 426 ntBASIC4.2□□□□□ -1.74
TNFP01375 AL161729.3-201ENST00000603533 673 ntBASIC4.2□□□□□ -1.74
TNFP01375 AC010201.1-201ENST00000605051 540 ntBASIC4.2□□□□□ -1.74
TNFP01375 ZNF345-216ENST00000640438 963 ntTSL 5 BASIC4.2□□□□□ -1.74
TNFP01375 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
TNFP01375 AC027228.2-201ENST00000567141 2154 ntBASIC4.2□□□□□ -1.74
TNFP01375 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
TNFP01375 AL672167.1-203ENST00000641299 2975 ntBASIC4.2□□□□□ -1.74
TNFP01375 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
TNFP01375 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFP01375 EOGT-210ENST00000615922 1931 ntBASIC4.19□□□□□ -1.74
TNFP01375 WDR72-204ENST00000559418 3602 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFP01375 SPAG17-201ENST00000336338 6924 ntAPPRIS P2 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFP01375 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC4.19□□□□□ -1.74
TNFP01375 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFP01375 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.19□□□□□ -1.74
TNFP01375 BTBD10P1-201ENST00000549824 1352 ntBASIC4.19□□□□□ -1.74
TNFP01375 RNU1-20P-201ENST00000363314 162 ntBASIC4.19□□□□□ -1.74
TNFP01375 RNA5SP515-201ENST00000364570 118 ntBASIC4.19□□□□□ -1.74
TNFP01375 PMS1-202ENST00000374826 948 ntTSL 1 (best) BASIC4.19□□□□□ -1.74
TNFP01375 BPY2-202ENST00000382585 321 ntAPPRIS P5 TSL 1 (best) BASIC4.19□□□□□ -1.74
TNFP01375 MIR1271-201ENST00000408537 86 ntBASIC4.19□□□□□ -1.74
TNFP01375 RNA5SP317-201ENST00000410176 116 ntBASIC4.19□□□□□ -1.74
TNFP01375 RNU6-628P-201ENST00000410675 107 ntBASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 85.9 ms