Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AC007448.2-201ENST00000583452 380 ntTSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 RPL27-207ENST00000590864 569 ntTSL 2 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 MTRNR2L12-201ENST00000600213 1049 ntAPPRIS P1 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 SNX6P1-201ENST00000601728 1224 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AL512782.1-201ENST00000603093 364 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AL391358.1-201ENST00000605342 190 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 FAM25E-202ENST00000608562 189 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC104307.1-201ENST00000616142 196 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 RMST_9.1-201ENST00000619945 193 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 AC011815.3-201ENST00000624194 473 ntBASIC4.15□□□□□ -1.75
SKA3Q8IX90 BANCR-201ENST00000624238 473 ntTSL 2 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SKA3Q8IX90 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.15□□□□□ -1.75
SKA3Q8IX90 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC4.15□□□□□ -1.75
SKA3Q8IX90 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SKA3Q8IX90 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.15□□□□□ -1.75
SKA3Q8IX90 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 EMSY-215ENST00000533248 3798 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL136164.3-201ENST00000624429 3978 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC068254.2-201ENST00000623938 3577 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 ATP6V1G3-203ENST00000367382 611 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 SNORD96B-201ENST00000386148 79 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL034403.1-201ENST00000399414 885 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 C8orf22-202ENST00000399653 1272 ntAPPRIS P3 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL592291.1-201ENST00000403830 352 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 RNA5SP104-201ENST00000410989 118 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 RPL7P57-201ENST00000423238 740 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 CYCSP11-201ENST00000436426 315 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC005154.2-201ENST00000438110 379 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC104306.1-201ENST00000449702 371 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC069277.2-201ENST00000454211 432 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 RPL35AP28-201ENST00000459730 331 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 RPL23AP2-201ENST00000471227 466 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 RN7SL41P-201ENST00000476144 297 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC090543.1-201ENST00000492168 485 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC105233.1-201ENST00000498840 781 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 ATXN3-206ENST00000502250 1259 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 ATP6V1G1P6-201ENST00000504007 334 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 HMGB1P47-201ENST00000511281 589 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL049544.1-201ENST00000511849 673 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 SOX5P1-201ENST00000524155 1127 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 C11orf74-210ENST00000534635 801 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC104002.2-201ENST00000553919 318 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 MIR4480-201ENST00000582492 71 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC006237.1-201ENST00000603816 480 ntTSL 3 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC073137.1-201ENST00000605636 634 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL049539.1-201ENST00000611964 459 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL354696.1-201ENST00000614652 497 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL162233.1-201ENST00000620014 944 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AC091953.3-201ENST00000623220 236 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 SUPT16HP1-201ENST00000537175 3133 ntBASIC4.14□□□□□ -1.75
SKA3Q8IX90 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
SKA3Q8IX90 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC4.14□□□□□ -1.75
SKA3Q8IX90 MARCH1-201ENST00000274056 5367 ntAPPRIS P1 TSL 4 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 CYP19A1-201ENST00000396402 4417 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SKA3Q8IX90 ZFRP1-201ENST00000457579 2970 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 ADGRL3-216ENST00000514157 4789 ntTSL 5 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 USP44-201ENST00000258499 4022 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
SKA3Q8IX90 LINC01222-201ENST00000427439 1785 ntTSL 2 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL589826.1-201ENST00000340697 249 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 RNU1-20P-201ENST00000363314 162 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 SNORA27.3-201ENST00000364937 134 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC019155.1-201ENST00000382242 574 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AC104297.1-201ENST00000393779 870 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC4.13□□□□□ -1.75
SKA3Q8IX90 EIF4A1P3-201ENST00000411521 244 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 OR51B3P-201ENST00000412287 913 ntBASIC4.13□□□□□ -1.75
SKA3Q8IX90 AL591848.1-201ENST00000413092 322 ntBASIC4.13□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms