Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 AL136084.2-222ENST00000589105 885 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 SLC14A1-214ENST00000589700 1022 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 SNORD91A-202ENST00000609620 191 ntBASIC6.19□□□□□ -1.42
COL8A1P27658 AL121612.2-201ENST00000612261 482 ntBASIC6.19□□□□□ -1.42
COL8A1P27658 AL354950.2-201ENST00000617939 290 ntBASIC6.19□□□□□ -1.42
COL8A1P27658 MIR6886-201ENST00000619864 61 ntBASIC6.19□□□□□ -1.42
COL8A1P27658 PTP4A1-206ENST00000627002 447 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 GCNT2-218ENST00000640968 939 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 ADAM3A-205ENST00000481351 2379 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 AC106882.1-201ENST00000515789 2371 ntTSL 2 BASIC6.19□□□□□ -1.42
COL8A1P27658 STXBP5-201ENST00000321680 3456 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 CTNND1-218ENST00000528232 5745 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 BIRC6-201ENST00000421745 15703 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 C11orf63-203ENST00000531316 2782 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL8A1P27658 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 ADAMTS3-204ENST00000622135 4479 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL8A1P27658 KLRD1-203ENST00000350274 3165 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 COL21A1-212ENST00000535941 3369 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 APP-209ENST00000440126 2846 ntTSL 2 BASIC6.19□□□□□ -1.42
COL8A1P27658 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 ARID5B-201ENST00000279873 7891 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 AL049641.1-201ENST00000441055 1948 ntBASIC6.19□□□□□ -1.42
COL8A1P27658 CFI-205ENST00000512148 1914 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 STK33-201ENST00000315204 2707 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 KLF7-201ENST00000309446 8362 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 AC091304.1-202ENST00000568624 3100 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 AKAP6-213ENST00000557354 5259 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL8A1P27658 TRPS1-208ENST00000519076 3329 ntTSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 KAT6B-203ENST00000372714 5892 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL8A1P27658 PGM3-212ENST00000513973 6107 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 MED23-201ENST00000354577 4581 ntAPPRIS ALT1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 PIK3C3-202ENST00000398870 9206 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 ARL6-204ENST00000463745 4231 ntAPPRIS P1 TSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 TSHZ2-203ENST00000603338 3803 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 TCF12-206ENST00000543579 1809 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 AC012668.3-202ENST00000417485 1642 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 DIP2B-201ENST00000301180 8593 ntAPPRIS P1 TSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 MKL2-209ENST00000574045 3309 ntAPPRIS P3 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 AC006020.1-201ENST00000420179 1854 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 KCNJ16-205ENST00000586462 1897 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 SPARCL1-205ENST00000503414 2520 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 TIMM21-204ENST00000580087 2524 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 TMSB4XP2-201ENST00000335179 210 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 PCYT1B-201ENST00000356768 1289 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 Y_RNA.80-201ENST00000362996 102 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 Y_RNA.255-201ENST00000364581 97 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 RNU6-619P-201ENST00000365146 108 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 FDPSP5-201ENST00000399474 1057 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL390316.1-201ENST00000406279 553 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 RN7SKP121-201ENST00000410842 305 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 MTCO3P19-201ENST00000415864 321 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC093151.2-201ENST00000429109 394 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 AC097468.2-201ENST00000429343 553 ntTSL 4 BASIC6.18□□□□□ -1.42
COL8A1P27658 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 ERLEC1P1-201ENST00000433806 578 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC007679.3-201ENST00000434035 414 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL161722.2-201ENST00000434731 981 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 GAPDHP59-201ENST00000435908 267 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 PRPF38AP2-201ENST00000438179 851 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL359672.1-201ENST00000442302 409 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL121871.1-201ENST00000443413 436 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 RPL26P30-201ENST00000453533 435 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 Z83838.1-202ENST00000456225 839 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 BTF3P5-201ENST00000457252 467 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 RNU7-63P-201ENST00000459054 62 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC040975.1-201ENST00000472104 316 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 CREM-242ENST00000490511 469 ntTSL 2 BASIC6.18□□□□□ -1.42
COL8A1P27658 RPL7P51-201ENST00000490532 749 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 TMEM267-202ENST00000500337 2950 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 HMGN1P16-201ENST00000508308 283 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC008957.1-202ENST00000512329 681 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 RNU2-53P-201ENST00000516257 147 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 RNU6-1261P-201ENST00000517194 104 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 IGLC4-201ENST00000517690 248 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 LECT2-205ENST00000522943 574 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC6.18□□□□□ -1.42
COL8A1P27658 KLRF1-203ENST00000537723 598 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 GNG2-203ENST00000553432 577 ntTSL 4 BASIC6.18□□□□□ -1.42
COL8A1P27658 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC6.18□□□□□ -1.42
COL8A1P27658 MIR548AI-201ENST00000579940 88 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AC113195.1-201ENST00000579952 141 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 MIR4502-201ENST00000580432 81 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 MIR5690-201ENST00000583739 73 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC6.18□□□□□ -1.42
COL8A1P27658 ADGRF5P1-202ENST00000590130 980 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL8A1P27658 RPL26P30-202ENST00000602923 645 ntBASIC6.18□□□□□ -1.42
COL8A1P27658 AL133338.2-201ENST00000604292 736 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms