Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 NPM1P6-201ENST00000521088 871 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 SOX5P1-201ENST00000524155 1127 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 OR8K2P-201ENST00000524645 927 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AP001880.2-201ENST00000538233 448 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC027176.2-201ENST00000559166 746 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC007496.1-201ENST00000565641 739 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 MIR548Y-201ENST00000582739 110 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 EIF1P5-201ENST00000585002 234 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC005377.1-201ENST00000605126 456 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC025175.1-201ENST00000606482 759 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 MIR7973-1-201ENST00000614683 76 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC024023.1-201ENST00000624530 922 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC015813.6-201ENST00000624409 5808 ntBASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC4.82□□□□□ -1.64
PCDHGA1Q9Y5H4 RABGAP1L-202ENST00000325589 1880 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 ANKRD30A-202ENST00000374660 4762 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 EDA2R-202ENST00000374719 3418 ntAPPRIS P3 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 NFE2L2-204ENST00000423513 1382 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RAB18-209ENST00000621805 4894 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 CCT8P1-201ENST00000413611 1657 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 Z95331.1-201ENST00000623075 23112 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 NAP1L4P1-201ENST00000319092 1157 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 R3HCC1L-204ENST00000370586 941 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RNU6-452P-201ENST00000384406 107 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AL049693.1-201ENST00000402760 611 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 UBE2V1P15-201ENST00000407776 448 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 GTF2IP5-201ENST00000414608 731 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RPL12P34-201ENST00000424532 479 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AL158154.1-201ENST00000427387 465 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC009238.2-201ENST00000431026 355 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC006037.1-201ENST00000437967 287 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC005154.2-201ENST00000438110 379 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RPS29P9-201ENST00000440360 171 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 XKRY2-201ENST00000442362 1093 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC016772.1-201ENST00000444170 1261 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC005229.2-201ENST00000456995 399 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC02050-201ENST00000473938 712 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RPS12P31-201ENST00000491419 398 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC105460.2-202ENST00000502936 825 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC097103.2-204ENST00000510068 569 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 GPX8-208ENST00000515370 1036 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC090023.2-201ENST00000540875 545 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 PARPBP-212ENST00000543784 992 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 TMEM191C-213ENST00000545656 574 ntAPPRIS ALT2 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC090515.3-201ENST00000560431 315 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 OR4H6P-202ENST00000603819 340 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AL359757.1-201ENST00000623176 255 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 CASC19-204ENST00000641001 2055 ntBASIC4.81□□□□□ -1.64
PCDHGA1Q9Y5H4 AC114546.3-201ENST00000623582 1734 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AL132640.2-201ENST00000559968 1698 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 MUC2-202ENST00000613187 4845 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 SNORA2.3-201ENST00000383920 135 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 HYALP1-201ENST00000417674 1279 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 BX323845.1-201ENST00000432417 179 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 MTND4P15-201ENST00000437913 1033 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AL033380.1-201ENST00000442781 421 ntTSL 2 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 MTCYBP21-201ENST00000443300 1113 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 AC006326.1-201ENST00000445465 787 ntBASIC4.8□□□□□ -1.64
PCDHGA1Q9Y5H4 MTND2P25-201ENST00000449028 610 ntBASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms