Protein–RNA interactions for Protein: Q9HBJ7

USP29, Ubiquitin carboxyl-terminal hydrolase 29, humanhuman

Predictions only

Length 922 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP29Q9HBJ7 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.55
USP29Q9HBJ7 CLCN5-202ENST00000376088 10108 ntTSL 2 BASIC5.34□□□□□ -1.56
USP29Q9HBJ7 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.56
USP29Q9HBJ7 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC5.34□□□□□ -1.56
USP29Q9HBJ7 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.34□□□□□ -1.56
USP29Q9HBJ7 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 DSPP-202ENST00000399271 4331 ntAPPRIS P1 TSL 5 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 OR5AC2-201ENST00000358642 930 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 OR8V1P-201ENST00000395193 873 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC119751.3-201ENST00000399720 670 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AL021331.1-201ENST00000402817 582 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 RPS24P7-201ENST00000416921 246 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AL391839.1-201ENST00000417447 265 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 EI24P4-201ENST00000423683 1078 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 PTGES3P1-201ENST00000439531 483 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 HNRNPDLP3-201ENST00000456745 380 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 LINC02049-201ENST00000490647 747 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 RPL5P23-201ENST00000496040 868 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC093297.1-201ENST00000511712 591 ntTSL 4 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 IGHV3-63-201ENST00000518422 341 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 NDUFS5P6-201ENST00000529136 295 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC011611.5-201ENST00000552477 578 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC016134.1-201ENST00000565259 701 ntTSL 3 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 MTND3P13-201ENST00000574391 343 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AL035411.2-201ENST00000604022 421 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC009948.4-201ENST00000604692 675 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 Z95327.3-201ENST00000610385 572 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AP004607.9-201ENST00000618202 316 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 U6.48-201ENST00000618523 106 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC123767.1-202ENST00000620407 817 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AP002799.1-201ENST00000623552 423 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AP002505.2-201ENST00000623585 696 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC073869.7-201ENST00000640874 297 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 UGT2B26P-201ENST00000508672 1613 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AL445623.2-201ENST00000640307 4805 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 FAM19A1-201ENST00000478136 2014 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 AC012321.1-201ENST00000561622 1588 ntBASIC5.33□□□□□ -1.56
USP29Q9HBJ7 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
USP29Q9HBJ7 POU1F1-202ENST00000350375 1491 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 EIF3M-208ENST00000531120 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 LRP1B-201ENST00000389484 16535 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 GABRG2-202ENST00000361925 3767 ntTSL 3 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AP001642.1-201ENST00000624727 2117 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 SUCLA2P2-201ENST00000417269 1309 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RPL23P2-201ENST00000320371 421 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RNA5SP223-201ENST00000365174 120 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RNU1-149P-201ENST00000390870 161 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RNU6-1242P-201ENST00000391052 103 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 MCTS2P-201ENST00000394552 546 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 HMGB3P7-201ENST00000400214 611 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AL589647.1-201ENST00000402485 466 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AC233289.1-201ENST00000403700 508 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RPL7P27-201ENST00000403775 720 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 U3.32-201ENST00000408116 212 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 HMGB3P31-201ENST00000413333 595 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RPS4XP16-201ENST00000427198 791 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 RPL23AP4-201ENST00000427757 463 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 TRAPPC13P1-201ENST00000435991 1062 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 HSFY3P-201ENST00000444242 1191 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 AC073850.1-201ENST00000449243 255 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 LINC00692-201ENST00000451284 932 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 NAALADL2-AS3-202ENST00000453180 413 ntTSL 3 BASIC5.32□□□□□ -1.56
USP29Q9HBJ7 PTGES3P5-201ENST00000455109 434 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 VN1R40P-201ENST00000455196 941 ntBASIC5.32□□□□□ -1.56
USP29Q9HBJ7 NDUFA5P9-201ENST00000472609 340 ntBASIC5.32□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms