Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 ARHGEF38-202ENST00000420470 5454 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 OR56A1-203ENST00000641900 8448 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 TLR3-201ENST00000296795 6015 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 RNA5SP305-201ENST00000362665 119 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 RN7SKP95-201ENST00000362860 303 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 RNU6-1279P-201ENST00000383917 103 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 ZNF736P10Y-201ENST00000403990 1110 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 DHFRP5-201ENST00000406944 564 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 MRM2-202ENST00000407040 582 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AP000233.1-201ENST00000426609 291 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 PPIAP13-201ENST00000434706 478 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AL627308.1-201ENST00000435693 821 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AL138799.2-201ENST00000439024 343 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AL606490.8-201ENST00000441624 319 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 EEF1A1P1-201ENST00000447052 739 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC017067.1-201ENST00000448570 447 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 RPSAP50-201ENST00000481955 852 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC008953.1-201ENST00000497334 318 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 RNA5SP464-201ENST00000516251 108 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 IGKV2D-10-201ENST00000520194 281 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AP001207.3-201ENST00000520268 491 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 DEFB109D-201ENST00000529497 240 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 HMGN2P6-201ENST00000551091 273 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC022726.1-201ENST00000587475 207 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 OR7E18P-201ENST00000592589 702 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 VN1R84P-201ENST00000593697 235 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AL355816.1-201ENST00000607951 118 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC055764.2-201ENST00000610089 670 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AC091905.4-201ENST00000623432 202 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 AP002799.1-201ENST00000623552 423 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 ETV1-205ENST00000405192 4402 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 AL592182.3-201ENST00000642132 3304 ntBASIC4.73□□□□□ -1.65
VPS39Q96JC1 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 LIPI-201ENST00000344577 1652 ntAPPRIS P2 TSL 1 (best) BASIC4.73□□□□□ -1.65
VPS39Q96JC1 ELF2-203ENST00000379550 3278 ntTSL 5 BASIC4.73□□□□□ -1.65
VPS39Q96JC1 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 ADGRL2-205ENST00000370717 5873 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 ZNF660-201ENST00000322734 5834 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 ZFRP1-201ENST00000457579 2970 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 BCAP29-203ENST00000379119 5773 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 RNU4-4P-201ENST00000364588 130 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 RNU6-152P-201ENST00000384037 107 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AL590762.2-201ENST00000395798 571 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 DPPA2P3-201ENST00000411853 655 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 RPL23AP27-201ENST00000415161 451 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 Z74021.1-201ENST00000423610 407 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC097523.2-201ENST00000435551 652 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC245517.2-201ENST00000442890 346 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 HMGB1P26-201ENST00000452520 628 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC004815.1-201ENST00000484185 331 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC025164.1-201ENST00000496249 478 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC147055.3-201ENST00000510547 851 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC090809.1-201ENST00000524132 570 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 MORF4L1P3-201ENST00000525966 950 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AP002340.1-201ENST00000529298 285 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 LINC02416-201ENST00000550019 540 ntTSL 4 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC133555.2-201ENST00000550213 292 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC015912.2-201ENST00000571053 181 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC233280.2-201ENST00000603917 1070 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC090525.3-201ENST00000605601 189 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 VIPR1-AS1-223ENST00000627073 451 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 MIR6715B-201ENST00000637172 77 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 UBA6-AS1-203ENST00000500538 3352 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC4.72□□□□□ -1.65
VPS39Q96JC1 AC009951.1-201ENST00000623674 2614 ntBASIC4.72□□□□□ -1.65
VPS39Q96JC1 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.72□□□□□ -1.65
VPS39Q96JC1 RNF145-201ENST00000274542 3364 ntTSL 2 BASIC4.71□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 94.5 ms