Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC023490.1-202ENST00000620909 820 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 ALG13-230ENST00000623189 458 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC025034.1-201ENST00000552778 1711 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 SLC26A7-209ENST00000617078 5094 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 TES-202ENST00000393481 2763 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 HACD4-202ENST00000495827 8267 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 OR10D3-202ENST00000641351 3561 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 ZNF534-204ENST00000433050 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 EIF2AK2-201ENST00000233057 10042 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 SCN1A-202ENST00000375405 8097 ntAPPRIS P3 TSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC108751.5-201ENST00000492880 1336 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 IGKV5-2-201ENST00000390244 408 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RNU1-149P-201ENST00000390870 161 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 CCL7-203ENST00000394630 687 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 FABP7P1-201ENST00000424004 391 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RPS4XP16-201ENST00000427198 791 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RPS6P12-201ENST00000432491 726 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 VN1R54P-201ENST00000435210 1049 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 ACTR3P2-201ENST00000439585 1257 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RN7SL443P-201ENST00000464331 290 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC092590.1-201ENST00000471672 737 ntTSL 3 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RN7SL222P-201ENST00000476452 299 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RPS18P6-201ENST00000476880 458 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RPL7AP6-201ENST00000477943 801 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC116562.1-201ENST00000485355 781 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC104687.1-201ENST00000485829 412 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 FTH1P24-201ENST00000503502 462 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LINC01088-205ENST00000509088 756 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC073569.1-201ENST00000548469 667 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 MIR4646-201ENST00000580775 63 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 Z98949.1-202ENST00000600211 1282 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 MTCO3P22-201ENST00000603219 784 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AC087283.1-201ENST00000604029 1074 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 MIR4435-2HG-220ENST00000609902 603 ntTSL 3 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AP005131.7-201ENST00000610087 611 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 AP002799.1-201ENST00000623552 423 ntBASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LAMTOR5-AS1-244ENST00000629484 780 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RNF123-214ENST00000629802 207 ntTSL 5 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 CNTRL-201ENST00000238341 7431 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
ZNF540Q8NDQ6 LRIT3-202ENST00000594814 3566 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 GTF2H2B-203ENST00000508065 1432 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 OR10A3-202ENST00000642047 2650 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 EEF1A1P42-201ENST00000613436 1331 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 PUS7L-201ENST00000344862 13593 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 FAM111A-201ENST00000361723 3592 ntAPPRIS P1 TSL 2 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC011493.1-201ENST00000596753 1632 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 CRISP1-202ENST00000335847 1911 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC008549.2-201ENST00000333482 706 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 MIR133B-201ENST00000362210 119 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 SNORA17.1-201ENST00000362945 126 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 DNAJA1P4-201ENST00000406473 1166 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RNU4-74P-201ENST00000411280 161 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RN7SKP273-201ENST00000411392 314 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 GABARAPL3-201ENST00000412799 354 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RANP4-201ENST00000413361 655 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC004690.1-201ENST00000418216 328 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 MTND2P15-201ENST00000418575 892 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 SLC4A1APP1-201ENST00000419995 602 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AL161457.1-201ENST00000434656 905 ntTSL 5 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 ELOCP11-201ENST00000436690 332 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC073052.1-201ENST00000440417 714 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC245047.2-201ENST00000441060 530 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 ELOCP16-201ENST00000444494 332 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RPL31P44-201ENST00000447680 377 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 RPS26P41-201ENST00000450370 284 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AC009365.2-201ENST00000453078 799 ntTSL 3 BASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 AL691482.1-201ENST00000453255 87 ntBASIC4.55□□□□□ -1.68
ZNF540Q8NDQ6 UBA52P7-201ENST00000486088 380 ntBASIC4.55□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms