Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ADAM24P-201ENST00000398655 2101 ntBASIC6.46□□□□□ -1.37
LIG3P49916 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 CRYBA1-201ENST00000225387 783 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 Y_RNA.25-201ENST00000362528 102 ntBASIC6.46□□□□□ -1.38
LIG3P49916 RNU5F-6P-201ENST00000362979 116 ntBASIC6.46□□□□□ -1.38
LIG3P49916 RNU6-433P-201ENST00000363216 104 ntBASIC6.46□□□□□ -1.38
LIG3P49916 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 RNU6-729P-201ENST00000384399 107 ntBASIC6.46□□□□□ -1.38
LIG3P49916 RNU6-1122P-201ENST00000384449 107 ntBASIC6.46□□□□□ -1.38
LIG3P49916 FIGN-202ENST00000409634 746 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 RN7SKP281-201ENST00000410472 352 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC002524.1-201ENST00000411687 547 ntBASIC6.46□□□□□ -1.38
LIG3P49916 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC6.46□□□□□ -1.38
LIG3P49916 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AL160163.1-201ENST00000417465 403 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AL354766.1-201ENST00000423396 542 ntBASIC6.46□□□□□ -1.38
LIG3P49916 OR8F1P-201ENST00000425243 930 ntBASIC6.46□□□□□ -1.38
LIG3P49916 USP9YP18-201ENST00000425912 695 ntBASIC6.46□□□□□ -1.38
LIG3P49916 RPS24P8-201ENST00000431490 402 ntBASIC6.46□□□□□ -1.38
LIG3P49916 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 LINC00411-201ENST00000436722 461 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 CNOT7P2-201ENST00000441051 832 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC096558.1-202ENST00000442794 561 ntTSL 4 BASIC6.46□□□□□ -1.38
LIG3P49916 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 TIMM8BP2-201ENST00000445940 251 ntBASIC6.46□□□□□ -1.38
LIG3P49916 SPANXB1-201ENST00000449283 469 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 PAXBP1P1-201ENST00000449315 447 ntBASIC6.46□□□□□ -1.38
LIG3P49916 PDSS1P2-201ENST00000449397 678 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC6.46□□□□□ -1.38
LIG3P49916 AC011752.1-201ENST00000451476 494 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 ETV5-AS1-201ENST00000453370 560 ntTSL 4 BASIC6.46□□□□□ -1.38
LIG3P49916 AC096666.1-201ENST00000454965 348 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 KLF3P2-201ENST00000465138 268 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 GLYCTK-AS1-202ENST00000472761 109 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 GM2AP2-201ENST00000491764 562 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 AC104078.2-201ENST00000504344 541 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 ZFPM2-AS1-201ENST00000509144 542 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 AC112242.1-201ENST00000515805 406 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 SNORA74.1-201ENST00000516320 180 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC6.46□□□□□ -1.38
LIG3P49916 AC012464.2-201ENST00000551257 779 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC6.46□□□□□ -1.38
LIG3P49916 BGLT3-201ENST00000564523 994 ntBASIC6.46□□□□□ -1.38
LIG3P49916 RN7SL230P-201ENST00000580835 303 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC020915.3-201ENST00000595301 550 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 AL589863.1-201ENST00000595383 631 ntBASIC6.46□□□□□ -1.38
LIG3P49916 ZNF675-208ENST00000601010 669 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 LARP7P1-201ENST00000605576 316 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC024255.1-201ENST00000614376 102 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC243756.2-201ENST00000618406 463 ntBASIC6.46□□□□□ -1.38
LIG3P49916 PPP3CB-AS1-213ENST00000620302 501 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 AC069234.4-201ENST00000621276 412 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AP000648.2-201ENST00000624182 404 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AC244205.1-201ENST00000624935 705 ntTSL 2 BASIC6.46□□□□□ -1.38
LIG3P49916 AC120349.2-201ENST00000625002 298 ntBASIC6.46□□□□□ -1.38
LIG3P49916 AL121936.2-201ENST00000641935 662 ntBASIC6.46□□□□□ -1.38
LIG3P49916 ROR1-204ENST00000545203 5362 ntAPPRIS ALT2 TSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 TPK1-207ENST00000538212 2243 ntTSL 2 BASIC6.46□□□□□ -1.38
LIG3P49916 SAGE3P-201ENST00000619800 1635 ntBASIC6.46□□□□□ -1.38
LIG3P49916 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC6.46□□□□□ -1.38
LIG3P49916 AC044839.1-206ENST00000635559 1324 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC6.46□□□□□ -1.38
LIG3P49916 ZNF410-211ENST00000555044 2601 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 DSC3-201ENST00000360428 6939 ntAPPRIS P1 TSL 1 (best) BASIC6.46□□□□□ -1.38
LIG3P49916 SEC22A-201ENST00000309934 4228 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 GTDC1-201ENST00000241391 2356 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 DST-205ENST00000370765 8999 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 PPIAL4G-201ENST00000419275 3856 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
LIG3P49916 IKZF2-210ENST00000451136 9344 ntTSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 RACGAP1-203ENST00000454520 3080 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 CYP2C8-210ENST00000535898 1799 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 LYPD6B-201ENST00000280115 1100 ntAPPRIS ALT2 TSL 5 BASIC6.45□□□□□ -1.38
LIG3P49916 SLC16A6-201ENST00000327268 3807 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 CD52-201ENST00000374213 468 ntAPPRIS P1 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 CARD6-202ENST00000381677 1094 ntTSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 MIR181A1-201ENST00000385026 110 ntBASIC6.45□□□□□ -1.38
LIG3P49916 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC6.45□□□□□ -1.38
LIG3P49916 MTCYBP36-201ENST00000404146 440 ntBASIC6.45□□□□□ -1.38
LIG3P49916 PRR21-201ENST00000408934 1170 ntAPPRIS P1 BASIC6.45□□□□□ -1.38
LIG3P49916 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC6.45□□□□□ -1.38
LIG3P49916 RPL21P50-201ENST00000417698 477 ntBASIC6.45□□□□□ -1.38
LIG3P49916 LINC01393-201ENST00000419905 746 ntTSL 2 BASIC6.45□□□□□ -1.38
LIG3P49916 AC009237.2-201ENST00000421358 284 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC104843.2-201ENST00000427666 297 ntBASIC6.45□□□□□ -1.38
LIG3P49916 TRIM60P16-201ENST00000444048 694 ntBASIC6.45□□□□□ -1.38
LIG3P49916 RPL18AP17-201ENST00000455326 198 ntBASIC6.45□□□□□ -1.38
LIG3P49916 AC026355.2-201ENST00000456755 723 ntTSL 2 BASIC6.45□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 95.3 ms