Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 NDRG3-203ENST00000373773 2098 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 FGF13-201ENST00000305414 1939 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 AC025125.1-201ENST00000624743 1922 ntBASIC6.54□□□□□ -1.36
MSX1P28360 DCX-206ENST00000496551 1320 ntAPPRIS P4 TSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 AP002026.1-201ENST00000500358 4825 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 OR9I1-203ENST00000641478 3027 ntAPPRIS P1 BASIC6.54□□□□□ -1.36
MSX1P28360 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 RBPJP6-201ENST00000411556 1431 ntBASIC6.54□□□□□ -1.36
MSX1P28360 NABP1-204ENST00000410026 11521 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 ZNF28-201ENST00000339844 650 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX1P28360 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 RNU6-169P-201ENST00000365336 107 ntBASIC6.54□□□□□ -1.36
MSX1P28360 SPRR2D-202ENST00000368756 788 ntAPPRIS P1 TSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 RNU6-657P-201ENST00000383904 107 ntBASIC6.54□□□□□ -1.36
MSX1P28360 MIR152-201ENST00000385212 87 ntBASIC6.54□□□□□ -1.36
MSX1P28360 SUMO2P13-201ENST00000403109 272 ntBASIC6.54□□□□□ -1.36
MSX1P28360 MRPL35-203ENST00000409180 651 ntAPPRIS ALT1 TSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 AC127526.1-201ENST00000417526 366 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC114482.1-201ENST00000418010 247 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AL590385.1-201ENST00000419446 462 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 AL034379.1-201ENST00000423216 253 ntBASIC6.54□□□□□ -1.36
MSX1P28360 RGS17P1-201ENST00000423358 553 ntBASIC6.54□□□□□ -1.36
MSX1P28360 ZNF880-203ENST00000424032 558 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX1P28360 AL589794.1-201ENST00000424971 390 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 AC104651.2-201ENST00000447549 528 ntBASIC6.54□□□□□ -1.36
MSX1P28360 CYCSP44-201ENST00000448560 313 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AL161630.1-201ENST00000450938 1299 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 AC006026.3-201ENST00000454029 143 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 YRDCP3-201ENST00000456507 480 ntBASIC6.54□□□□□ -1.36
MSX1P28360 RPL37P3-201ENST00000456825 293 ntBASIC6.54□□□□□ -1.36
MSX1P28360 Y_RNA.635-201ENST00000459041 101 ntBASIC6.54□□□□□ -1.36
MSX1P28360 RN7SL149P-201ENST00000465197 281 ntBASIC6.54□□□□□ -1.36
MSX1P28360 UCK2-205ENST00000469256 753 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 VN1R17P-201ENST00000472048 1090 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 MYL6P4-201ENST00000477911 453 ntBASIC6.54□□□□□ -1.36
MSX1P28360 NDUFB2-215ENST00000482954 544 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 ZNF138-207ENST00000494380 842 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 NREP-AS1-201ENST00000503242 411 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 AC092349.1-201ENST00000504903 310 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC010587.1-201ENST00000505809 469 ntBASIC6.54□□□□□ -1.36
MSX1P28360 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC6.54□□□□□ -1.36
MSX1P28360 OR4R1P-201ENST00000529879 463 ntBASIC6.54□□□□□ -1.36
MSX1P28360 OR7E161P-201ENST00000533722 967 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC011773.2-201ENST00000551479 285 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 AC090751.1-201ENST00000566966 267 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AL591686.2-201ENST00000608241 475 ntTSL 4 BASIC6.54□□□□□ -1.36
MSX1P28360 FAM13A-AS1_2.1-201ENST00000611121 108 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AL080312.2-201ENST00000613001 630 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC009237.17-201ENST00000618111 748 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC022106.2-201ENST00000620114 757 ntBASIC6.54□□□□□ -1.36
MSX1P28360 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 U4.1-201ENST00000620349 87 ntBASIC6.54□□□□□ -1.36
MSX1P28360 AC079597.1-201ENST00000624306 508 ntBASIC6.54□□□□□ -1.36
MSX1P28360 OR2L1P-202ENST00000641567 1023 ntBASIC6.54□□□□□ -1.36
MSX1P28360 TTC21A-203ENST00000431162 4209 ntAPPRIS ALT2 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 CLEC1A-204ENST00000457018 1686 ntAPPRIS ALT2 TSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 CABYR-207ENST00000486759 1664 ntAPPRIS P4 TSL 5 BASIC6.54□□□□□ -1.36
MSX1P28360 UTY-216ENST00000624098 3636 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 GPR155-206ENST00000614352 7321 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 AL023495.1-201ENST00000413005 1923 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 PPBPP2-201ENST00000513150 1362 ntBASIC6.54□□□□□ -1.36
MSX1P28360 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.54□□□□□ -1.36
MSX1P28360 LARP1B-203ENST00000432347 2707 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 PPHLN1-207ENST00000432191 3377 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 PHF11-201ENST00000357596 1471 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 TRIQK-204ENST00000517858 1882 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 VCAN-202ENST00000342785 7154 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 MEPE-208ENST00000540395 2135 ntAPPRIS ALT2 TSL 4 BASIC6.53□□□□□ -1.36
MSX1P28360 ESRRG-201ENST00000359162 5197 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 ANKRD26P2-201ENST00000445530 1710 ntBASIC6.53□□□□□ -1.36
MSX1P28360 CU633906.1-201ENST00000621924 2380 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 CORIN-211ENST00000610355 4696 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 GRIA3-204ENST00000541091 2740 ntAPPRIS P5 TSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC6.53□□□□□ -1.36
MSX1P28360 ABI1-202ENST00000359188 3492 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 AIF1-202ENST00000376049 524 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
MSX1P28360 RNU6-1151P-201ENST00000384684 107 ntBASIC6.53□□□□□ -1.36
MSX1P28360 MIR551B-201ENST00000384984 96 ntBASIC6.53□□□□□ -1.36
MSX1P28360 RNU6-308P-201ENST00000390957 107 ntBASIC6.53□□□□□ -1.36
MSX1P28360 FAUP2-201ENST00000394301 401 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AL139805.1-201ENST00000407837 289 ntBASIC6.53□□□□□ -1.36
MSX1P28360 Y_RNA.615-201ENST00000410769 117 ntBASIC6.53□□□□□ -1.36
MSX1P28360 RNU6-847P-201ENST00000411115 108 ntBASIC6.53□□□□□ -1.36
MSX1P28360 HCG25-217ENST00000422366 702 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 AC004870.2-202ENST00000423781 706 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 GSTA6P-201ENST00000424144 582 ntBASIC6.53□□□□□ -1.36
MSX1P28360 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 AL022324.2-201ENST00000434827 780 ntBASIC6.53□□□□□ -1.36
MSX1P28360 AL033504.1-204ENST00000434985 413 ntTSL 2 BASIC6.53□□□□□ -1.36
MSX1P28360 DARS-AS1-205ENST00000444649 558 ntTSL 3 BASIC6.53□□□□□ -1.36
MSX1P28360 PRDX1P1-201ENST00000449329 596 ntBASIC6.53□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms