Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 RBPJP2-201ENST00000618187 1444 ntBASIC4.8□□□□□ -1.64
MSH3P20585 CASC19-206ENST00000641028 1430 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 NAIP-210ENST00000523981 4543 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 AL359922.3-201ENST00000624779 1670 ntBASIC4.8□□□□□ -1.64
MSH3P20585 CHL1-216ENST00000620033 7311 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 NME8-203ENST00000440017 1879 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 ECHDC1-222ENST00000531967 2585 ntAPPRIS ALT2 TSL 2 BASIC4.79□□□□□ -1.64
MSH3P20585 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 C10orf120-201ENST00000329446 1064 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC4.79□□□□□ -1.64
MSH3P20585 STAT4-203ENST00000409995 709 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AL603962.1-201ENST00000413148 436 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AC063965.1-201ENST00000416679 499 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH3P20585 RPS26P13-201ENST00000419030 330 ntBASIC4.79□□□□□ -1.64
MSH3P20585 EIF4A1P1-201ENST00000420241 934 ntBASIC4.79□□□□□ -1.64
MSH3P20585 CKS1BP6-201ENST00000424932 240 ntBASIC4.79□□□□□ -1.64
MSH3P20585 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH3P20585 AC104837.2-201ENST00000427236 424 ntBASIC4.79□□□□□ -1.64
MSH3P20585 PTP4A1P3-201ENST00000433661 420 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AL451139.1-201ENST00000434718 346 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AL450263.2-201ENST00000439400 589 ntBASIC4.79□□□□□ -1.64
MSH3P20585 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 CASP12-208ENST00000448103 1071 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 OR1H1P-201ENST00000448731 937 ntBASIC4.79□□□□□ -1.64
MSH3P20585 KIAA0895-209ENST00000453212 956 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH3P20585 RPS3AP53-201ENST00000454716 778 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC091685.2-201ENST00000454924 864 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AURKAPS2-201ENST00000454983 333 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC4.79□□□□□ -1.64
MSH3P20585 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH3P20585 RN7SL558P-201ENST00000497468 299 ntBASIC4.79□□□□□ -1.64
MSH3P20585 SUMO1P1-201ENST00000497904 306 ntBASIC4.79□□□□□ -1.64
MSH3P20585 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AC246817.2-206ENST00000520570 582 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH3P20585 SOX5P1-201ENST00000524155 1127 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC004923.2-201ENST00000529649 369 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.79□□□□□ -1.64
MSH3P20585 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AC018552.1-201ENST00000562099 811 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC018371.1-201ENST00000584560 640 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH3P20585 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC4.79□□□□□ -1.64
MSH3P20585 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 AC245884.10-201ENST00000597355 337 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AL031320.1-201ENST00000604177 357 ntBASIC4.79□□□□□ -1.64
MSH3P20585 MIR8084-201ENST00000614105 89 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AL022401.1-201ENST00000619498 108 ntBASIC4.79□□□□□ -1.64
MSH3P20585 AC090617.9-201ENST00000623751 147 ntBASIC4.79□□□□□ -1.64
MSH3P20585 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 SLMAP-206ENST00000428312 4132 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 RAP1B-201ENST00000250559 13438 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.79□□□□□ -1.64
MSH3P20585 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
MSH3P20585 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
MSH3P20585 GNAS-202ENST00000306090 477 ntTSL 5 BASIC4.78□□□□□ -1.64
MSH3P20585 LINC01752-201ENST00000417299 438 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH3P20585 BTF3P9-201ENST00000418784 283 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AL360093.1-201ENST00000420237 1126 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 AL158166.2-201ENST00000420845 748 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH3P20585 EIF4HP2-201ENST00000424380 563 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC012519.1-201ENST00000424588 610 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC007559.1-201ENST00000428736 355 ntBASIC4.78□□□□□ -1.64
MSH3P20585 RPS17P8-201ENST00000434525 335 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC092447.2-201ENST00000435487 669 ntBASIC4.78□□□□□ -1.64
MSH3P20585 RNFT1P2-201ENST00000443064 757 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AL050338.1-201ENST00000445585 786 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AC010733.1-201ENST00000451515 401 ntBASIC4.78□□□□□ -1.64
MSH3P20585 TVP23BP2-201ENST00000455082 615 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.78□□□□□ -1.64
MSH3P20585 AC063943.1-201ENST00000465434 453 ntBASIC4.78□□□□□ -1.64
MSH3P20585 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC4.78□□□□□ -1.64
MSH3P20585 F11-AS1-201ENST00000505103 1178 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
MSH3P20585 TPT1P8-201ENST00000510120 555 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC093535.1-201ENST00000515808 747 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 RNA5SP392-201ENST00000516905 112 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AP000942.2-201ENST00000526310 628 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 C1GALT1P1-201ENST00000548895 1089 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AC133555.2-201ENST00000550213 292 ntBASIC4.78□□□□□ -1.64
MSH3P20585 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC4.78□□□□□ -1.64
MSH3P20585 ETFRF1-208ENST00000556402 874 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 MIR4760-201ENST00000585040 80 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.78□□□□□ -1.64
MSH3P20585 RNF138P2-201ENST00000603490 592 ntBASIC4.78□□□□□ -1.64
MSH3P20585 RPAP2P1-201ENST00000603626 1168 ntBASIC4.78□□□□□ -1.64
MSH3P20585 AL135786.2-201ENST00000608422 615 ntBASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 78.3 ms