Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 MTND4LP24-201ENST00000572277 291 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC021549.1-201ENST00000580937 433 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC093227.3-202ENST00000586606 704 ntAPPRIS P5 TSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 LINC01539-206ENST00000593282 678 ntTSL 4 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC095055.1-201ENST00000603472 1113 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 ADAM29-213ENST00000615367 3386 ntAPPRIS P1 TSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC074276.2-201ENST00000619891 348 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 WWOX-217ENST00000620008 450 ntTSL 2 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 AC092747.4-201ENST00000620519 1861 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 LINC00216-201ENST00000623548 1126 ntBASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 CU634019.2-201ENST00000625184 593 ntTSL 3 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 SPTY2D1-AS1-204ENST00000634992 373 ntAPPRIS P5 TSL 5 BASIC4.59□□□□□ -1.67
ZNF540Q8NDQ6 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
ZNF540Q8NDQ6 AL672167.1-203ENST00000641299 2975 ntBASIC4.59□□□□□ -1.68
ZNF540Q8NDQ6 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC4.59□□□□□ -1.68
ZNF540Q8NDQ6 KMO-204ENST00000366559 5261 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.68
ZNF540Q8NDQ6 AL359922.3-201ENST00000624779 1670 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 RNA5SP305-201ENST00000362665 119 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 U3.15-201ENST00000365398 212 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 CENPW-203ENST00000368328 750 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 C1orf185-201ENST00000371759 915 ntAPPRIS P2 TSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC108681.1-202ENST00000417384 589 ntTSL 4 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 LINC00266-4P-201ENST00000427373 842 ntTSL 3 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 LINC01767-201ENST00000451914 545 ntTSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 RPL37P3-201ENST00000456825 293 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 RN7SL97P-201ENST00000486780 299 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC107398.1-201ENST00000486904 505 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 RNU6-889P-201ENST00000517189 103 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 ASB8-215ENST00000540782 659 ntTSL 3 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 CPSF7-220ENST00000541963 549 ntTSL 4 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC005670.2-201ENST00000571841 889 ntAPPRIS P1 TSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 RN7SL52P-201ENST00000584271 284 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 ZNF682-204ENST00000593468 581 ntTSL 4 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC008537.2-201ENST00000596135 482 ntTSL 3 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 ZNF92P3-201ENST00000596594 954 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 BNIP3P32-201ENST00000600015 554 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC083899.3-201ENST00000603413 594 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 IMMP1LP1-201ENST00000605170 488 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AC010680.4-201ENST00000605334 543 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 AP004607.9-201ENST00000618202 316 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 LGI1-209ENST00000627699 664 ntTSL 3 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 CHD9-221ENST00000615216 10603 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 ARHGAP42P1-201ENST00000507474 1976 ntBASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
ZNF540Q8NDQ6 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 SMG1P1-206ENST00000431681 2913 ntTSL 2 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 SUPT3H-202ENST00000371459 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 PMCHL1-201ENST00000418902 1917 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AL645733.1-201ENST00000402250 217 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 RNA5SP239-201ENST00000410218 129 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 RPL35AP24-201ENST00000413846 330 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 QRSL1P2-201ENST00000418582 964 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 E2F6P2-201ENST00000420708 748 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC005033.1-201ENST00000428904 813 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 MRPS33P4-201ENST00000434892 317 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 TXNP5-201ENST00000441043 315 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 OTX2P1-201ENST00000450956 354 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AL389915.2-201ENST00000454576 441 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 RPL30P11-201ENST00000495304 339 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 PPM1AP1-201ENST00000502740 1135 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 OR5H4P-201ENST00000510851 923 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 RNU6-760P-201ENST00000516078 97 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 RNU6-551P-201ENST00000516661 103 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC012400.1-201ENST00000518452 381 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC023202.1-201ENST00000521681 491 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AP000676.2-201ENST00000529711 301 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 OR7G1-201ENST00000541538 936 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC108721.1-201ENST00000547088 348 ntTSL 3 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AL512310.9-201ENST00000553311 948 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AL109741.3-201ENST00000561748 592 ntBASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 MSMB-201ENST00000581478 386 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.57□□□□□ -1.68
ZNF540Q8NDQ6 MMP13-203ENST00000615555 1152 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 169.2 ms