Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SKA3Q8IX90 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.19□□□□□ -1.74
SKA3Q8IX90 PLS3-209ENST00000539310 3037 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
SKA3Q8IX90 AC017104.4-201ENST00000636283 1592 ntBASIC4.19□□□□□ -1.74
SKA3Q8IX90 PLEKHG7-203ENST00000638590 3267 ntAPPRIS P1 TSL 2 BASIC4.19□□□□□ -1.74
SKA3Q8IX90 ERICH3-AS1-202ENST00000612390 4874 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AL353784.1-201ENST00000422842 2300 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC132825.1-201ENST00000463573 2247 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AKT3-201ENST00000263826 7081 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 OR8D1-202ENST00000641015 8286 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 ELOC-201ENST00000284811 683 ntAPPRIS P1 TSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 MIR421-201ENST00000365696 85 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 MIR708-201ENST00000390708 88 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 RNU1-82P-201ENST00000390851 165 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 U3.35-201ENST00000408405 208 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 RNA5SP113-201ENST00000410486 84 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC004074.1-201ENST00000421810 1063 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 MTND4LP13-201ENST00000425022 298 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 NRBF2P3-201ENST00000432731 865 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC008072.1-201ENST00000434254 824 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 LYPLA1P1-201ENST00000434514 622 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AP000302.1-201ENST00000450928 666 ntTSL 2 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC091685.2-201ENST00000454924 864 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 EIF2S2P4-201ENST00000461070 984 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 OR51K1P-201ENST00000510214 950 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 FABP5P6-201ENST00000510588 409 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 VWA8P1-201ENST00000510889 176 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 RNU6-491P-201ENST00000516099 110 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 RNU1-6P-201ENST00000516290 144 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 NPM1P6-201ENST00000521088 871 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC100844.1-201ENST00000580622 440 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 MIR3667-201ENST00000581025 74 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC091059.1-201ENST00000585190 215 ntTSL 3 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 IMMP1LP1-201ENST00000605170 488 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC007620.3-201ENST00000608131 497 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AL133370.2-201ENST00000619934 439 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 AC140113.4-201ENST00000622087 222 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 LINC00216-201ENST00000623548 1126 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 DHX9P1-201ENST00000436565 3076 ntBASIC4.18□□□□□ -1.74
SKA3Q8IX90 OR5H14-202ENST00000641380 7323 ntAPPRIS P1 BASIC4.18□□□□□ -1.74
SKA3Q8IX90 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 SLC5A12-202ENST00000396005 6250 ntAPPRIS P1 TSL 1 (best) BASIC4.18□□□□□ -1.74
SKA3Q8IX90 SERPINA7-202ENST00000372563 1600 ntAPPRIS P1 TSL 5 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 C1orf141-208ENST00000621590 4179 ntAPPRIS ALT2 TSL 5 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 NUP205-201ENST00000285968 6266 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 PLCB1-233ENST00000637919 5074 ntTSL 5 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 ADIG-201ENST00000373348 430 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 ARL4AP5-201ENST00000404372 599 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 VN1R37P-201ENST00000419096 748 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL590623.1-201ENST00000427864 105 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 ARL6IP1P2-201ENST00000431356 563 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC068491.2-201ENST00000438897 617 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC073648.4-201ENST00000442655 781 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 Z80107.2-201ENST00000445127 392 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.17□□□□□ -1.74
SKA3Q8IX90 MTND2P3-201ENST00000452458 470 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 TPRKBP1-201ENST00000456243 481 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 HNRNPDLP3-201ENST00000456745 380 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 HSPE1P22-201ENST00000456856 327 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 LINC01192-207ENST00000492553 836 ntTSL 5 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 RNU6-760P-201ENST00000516078 97 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 RN7SKP276-201ENST00000516242 268 ntBASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL110505.1-201ENST00000557062 522 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL121989.1-201ENST00000585888 746 ntTSL 3 BASIC4.17□□□□□ -1.74
SKA3Q8IX90 AL135786.2-201ENST00000608422 615 ntBASIC4.17□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 90.2 ms