Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL163153.1-201ENST00000554223 283 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AL031846.1-201ENST00000560933 314 ntBASIC6.56□□□□□ -1.36
MSX1P28360 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 MIR4470-201ENST00000583453 72 ntBASIC6.56□□□□□ -1.36
MSX1P28360 AC009303.2-206ENST00000588042 786 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 AC092807.2-201ENST00000609367 243 ntBASIC6.56□□□□□ -1.36
MSX1P28360 MIR7515HG-257ENST00000625915 852 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 AL133216.2-202ENST00000634512 349 ntBASIC6.56□□□□□ -1.36
MSX1P28360 JAML-213ENST00000640745 951 ntTSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 ARHGAP32-203ENST00000524655 8194 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 ZNF732-202ENST00000619749 2179 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 UMAD1-206ENST00000636849 2157 ntAPPRIS P1 TSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 C10orf67-204ENST00000636213 3981 ntAPPRIS ALT2 TSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC6.56□□□□□ -1.36
MSX1P28360 ARPP21-220ENST00000441454 2880 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 TTC39B-207ENST00000507993 1950 ntAPPRIS ALT2 TSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 AC009237.3-203ENST00000442128 3551 ntBASIC6.56□□□□□ -1.36
MSX1P28360 CACNB2-207ENST00000377329 3396 ntTSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 AC007996.1-201ENST00000620414 2821 ntBASIC6.56□□□□□ -1.36
MSX1P28360 DNM1L-205ENST00000414834 4211 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 MKL2-201ENST00000318282 8608 ntAPPRIS P3 TSL 5 BASIC6.56□□□□□ -1.36
MSX1P28360 MAPK10-380ENST00000642015 3137 ntAPPRIS P2 BASIC6.56□□□□□ -1.36
MSX1P28360 MRPS27-201ENST00000261413 2785 ntAPPRIS P1 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 PSG1-203ENST00000403380 1722 ntTSL 2 BASIC6.56□□□□□ -1.36
MSX1P28360 SLAMF6-202ENST00000368057 2712 ntAPPRIS ALT2 TSL 1 (best) BASIC6.56□□□□□ -1.36
MSX1P28360 GBA3-205ENST00000511446 2018 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX1P28360 GAPVD1-207ENST00000394105 5207 ntAPPRIS P3 TSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 AIG1-209ENST00000629020 3636 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX1P28360 CLSPN-201ENST00000251195 4769 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 CPNE4-202ENST00000502818 2120 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 ALG13-202ENST00000371979 2770 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 ZNF521-214ENST00000584787 4327 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 CD84-201ENST00000311224 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 RNU4-81P-201ENST00000363561 144 ntBASIC6.55□□□□□ -1.36
MSX1P28360 RNU6-1097P-201ENST00000363586 107 ntBASIC6.55□□□□□ -1.36
MSX1P28360 RNU6-1017P-201ENST00000363613 106 ntBASIC6.55□□□□□ -1.36
MSX1P28360 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
MSX1P28360 OR2H1-204ENST00000396792 1294 ntAPPRIS P1 BASIC6.55□□□□□ -1.36
MSX1P28360 HMGB1P17-201ENST00000403495 628 ntBASIC6.55□□□□□ -1.36
MSX1P28360 CHEK2P3-201ENST00000416118 248 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AC007879.3-201ENST00000417096 556 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX1P28360 UQCRBP1-201ENST00000421129 336 ntBASIC6.55□□□□□ -1.36
MSX1P28360 HSPE1P1-201ENST00000421494 318 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AC006076.1-201ENST00000423233 345 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC026355.1-201ENST00000423466 587 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC019097.1-201ENST00000424783 735 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AL121916.1-201ENST00000429405 308 ntBASIC6.55□□□□□ -1.36
MSX1P28360 RPS3AP38-201ENST00000435889 763 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AL356276.2-201ENST00000435919 558 ntBASIC6.55□□□□□ -1.36
MSX1P28360 RPL23AP19-201ENST00000436229 369 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AL591719.2-201ENST00000437400 386 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC091685.2-201ENST00000454924 864 ntBASIC6.55□□□□□ -1.36
MSX1P28360 RN7SL325P-201ENST00000460434 283 ntBASIC6.55□□□□□ -1.36
MSX1P28360 TFP1-201ENST00000460564 572 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX1P28360 MBNL1-213ENST00000465907 945 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 RPL7P22-201ENST00000466005 733 ntBASIC6.55□□□□□ -1.36
MSX1P28360 TFP1-203ENST00000490470 561 ntTSL 4 BASIC6.55□□□□□ -1.36
MSX1P28360 MTCO1P29-201ENST00000496868 288 ntBASIC6.55□□□□□ -1.36
MSX1P28360 PTP4A1P4-201ENST00000512479 322 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AC090833.1-201ENST00000513853 806 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 LINC00967-201ENST00000517689 792 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC107952.1-201ENST00000524200 376 ntBASIC6.55□□□□□ -1.36
MSX1P28360 NDUFA3P4-201ENST00000560814 250 ntBASIC6.55□□□□□ -1.36
MSX1P28360 AC006441.4-202ENST00000577621 510 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 RN7SL426P-201ENST00000579106 295 ntBASIC6.55□□□□□ -1.36
MSX1P28360 LINC02210-208ENST00000585118 546 ntTSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX1P28360 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 ARF4-AS1-203ENST00000607782 552 ntTSL 3 BASIC6.55□□□□□ -1.36
MSX1P28360 AC245407.2-201ENST00000614199 451 ntBASIC6.55□□□□□ -1.36
MSX1P28360 OR1N1-202ENST00000619659 939 ntBASIC6.55□□□□□ -1.36
MSX1P28360 uc_338.22-201ENST00000622722 187 ntBASIC6.55□□□□□ -1.36
MSX1P28360 CASC19-232ENST00000641480 1244 ntBASIC6.55□□□□□ -1.36
MSX1P28360 FAM83B-201ENST00000306858 3167 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 OFD1P10Y-201ENST00000434110 1433 ntBASIC6.55□□□□□ -1.36
MSX1P28360 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 AC126323.2-201ENST00000559985 2369 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 PDE11A-212ENST00000358450 3489 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 ADAL-202ENST00000422466 3767 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX1P28360 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 PARP4P1-201ENST00000435945 2337 ntBASIC6.55□□□□□ -1.36
MSX1P28360 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 AC013488.1-201ENST00000526618 1838 ntBASIC6.55□□□□□ -1.36
MSX1P28360 NRXN1-211ENST00000406859 2553 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 GRIK1-202ENST00000389124 2712 ntTSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 ECT2-201ENST00000232458 4087 ntAPPRIS P2 TSL 1 (best) BASIC6.55□□□□□ -1.36
MSX1P28360 MSH6-209ENST00000538136 4055 ntTSL 2 BASIC6.55□□□□□ -1.36
MSX1P28360 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC6.55□□□□□ -1.36
MSX1P28360 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.54□□□□□ -1.36
MSX1P28360 C5orf64-203ENST00000505642 2970 ntTSL 2 BASIC6.54□□□□□ -1.36
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms