Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 SMARCE1P6-201ENST00000398372 1216 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 MRPL42P2-201ENST00000403169 426 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 OR6E1P-201ENST00000414424 923 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC018865.2-201ENST00000423631 129 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 ZEB2-AS1-203ENST00000428623 436 ntTSL 2 BASIC6.21□□□□□ -1.42
COL8A1P27658 RBMY2QP-201ENST00000429799 1147 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 MRPS31P2-201ENST00000451581 518 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 PCNPP5-201ENST00000452246 481 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AL606490.1-201ENST00000452266 765 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC096639.1-201ENST00000456240 347 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 SETP20-201ENST00000457046 852 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 RPL34P34-201ENST00000465389 354 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 RPL34P33-201ENST00000486062 334 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 COX6B1P2-201ENST00000489624 230 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC092834.1-201ENST00000506514 442 ntTSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 TMEM248P1-201ENST00000510579 951 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 RN7SKP11-201ENST00000517018 287 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 IGLV1-62-201ENST00000518003 441 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 RBPMS-207ENST00000519647 780 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 AC008663.1-201ENST00000519821 455 ntTSL 4 BASIC6.21□□□□□ -1.42
COL8A1P27658 AC022882.1-201ENST00000532142 501 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC007527.1-201ENST00000535528 313 ntTSL 2 BASIC6.21□□□□□ -1.42
COL8A1P27658 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 POLR2KP1-201ENST00000553226 168 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC124068.1-201ENST00000563131 678 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 LINC01919-202ENST00000579506 384 ntTSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 AC063977.7-201ENST00000594454 337 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC008555.7-201ENST00000605008 583 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC004805.2-201ENST00000605382 482 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 AC020634.1-201ENST00000608701 549 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AC008115.3-201ENST00000614874 549 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 RN7SL126P-201ENST00000616400 299 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 AP001052.1-201ENST00000626421 99 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 AL034408.1-201ENST00000637712 664 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 OPALIN-206ENST00000611913 3115 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC6.21□□□□□ -1.42
COL8A1P27658 OPALIN-204ENST00000419479 3581 ntTSL 2 BASIC6.21□□□□□ -1.42
COL8A1P27658 KRBOX1-202ENST00000418176 2566 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 PLA2G7-202ENST00000537365 1747 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 PCDH15-226ENST00000613657 6329 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 NECAP1-221ENST00000639955 3479 ntAPPRIS P2 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 SPRY1-201ENST00000339241 2348 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 FHL1-227ENST00000628568 2304 ntTSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 SAMMSON-210ENST00000641260 1308 ntBASIC6.21□□□□□ -1.42
COL8A1P27658 CXCR6-202ENST00000438735 2242 ntAPPRIS P1 TSL 3 BASIC6.21□□□□□ -1.42
COL8A1P27658 LINC01091-204ENST00000515769 2204 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 CNKSR3-205ENST00000607772 21063 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 AXDND1-214ENST00000617277 3405 ntAPPRIS ALT2 TSL 5 BASIC6.21□□□□□ -1.42
COL8A1P27658 CLSTN2-201ENST00000458420 14202 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
COL8A1P27658 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 AMOT-204ENST00000371962 2720 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 DMD-211ENST00000378707 7410 ntTSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 AC104581.5-201ENST00000624171 7141 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 TCL6-201ENST00000352367 3398 ntTSL 2 BASIC6.2□□□□□ -1.42
COL8A1P27658 TRIM16-212ENST00000578237 3206 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 BLOC1S2-206ENST00000618916 2470 ntTSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 EHHADH-201ENST00000231887 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 PRIM2-207ENST00000615550 2308 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 CD163-203ENST00000432237 3701 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 TEKT1-201ENST00000338694 3421 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 ZMYND11-215ENST00000558098 1859 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 AC125603.4-201ENST00000621942 2699 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 MTND5P28-201ENST00000438005 1594 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC6.2□□□□□ -1.42
COL8A1P27658 MFSD4BP1-201ENST00000513330 1552 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL8A1P27658 SSX5-202ENST00000347757 1261 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 Y_RNA.364-201ENST00000365532 101 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 SSX5-203ENST00000376923 1208 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
COL8A1P27658 Y_RNA.455-201ENST00000384230 98 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 Y_RNA.555-201ENST00000384673 110 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 IGLV3-10-201ENST00000390315 382 ntAPPRIS P1 BASIC6.2□□□□□ -1.42
COL8A1P27658 RPL31P52-201ENST00000407532 367 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.2□□□□□ -1.42
COL8A1P27658 Y_RNA.615-201ENST00000410769 117 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 AC127526.1-201ENST00000417526 366 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 RBMY2KP-201ENST00000418221 992 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 AL162430.2-201ENST00000422306 435 ntTSL 3 BASIC6.2□□□□□ -1.42
COL8A1P27658 RAC1P6-201ENST00000423911 575 ntBASIC6.2□□□□□ -1.42
COL8A1P27658 AC244453.3-201ENST00000426275 459 ntTSL 5 BASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 161.9 ms