Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 FABP4-201ENST00000256104 941 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 RNA5SP123-201ENST00000363244 119 ntBASIC5.41□□□□□ -1.54
BDNFP23560 RNA5SP27-201ENST00000363839 119 ntBASIC5.41□□□□□ -1.54
BDNFP23560 SAMD13-204ENST00000370671 724 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 AL109941.1-201ENST00000401925 229 ntBASIC5.41□□□□□ -1.54
BDNFP23560 HMGB3P18-201ENST00000406327 590 ntBASIC5.41□□□□□ -1.54
BDNFP23560 GPS2P1-201ENST00000411761 986 ntBASIC5.41□□□□□ -1.54
BDNFP23560 GAPDHP49-201ENST00000421421 961 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AL122034.1-201ENST00000427609 497 ntTSL 2 BASIC5.41□□□□□ -1.54
BDNFP23560 KNOP1P3-201ENST00000446933 426 ntBASIC5.41□□□□□ -1.54
BDNFP23560 HRAT17-201ENST00000447785 547 ntTSL 4 BASIC5.41□□□□□ -1.54
BDNFP23560 NFU1-207ENST00000462320 558 ntTSL 4 BASIC5.41□□□□□ -1.54
BDNFP23560 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 AC090686.1-201ENST00000481577 749 ntBASIC5.41□□□□□ -1.54
BDNFP23560 RPL37AP8-201ENST00000494116 276 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 NDUFB5P1-201ENST00000508134 564 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 AC110792.2-201ENST00000510278 224 ntBASIC5.41□□□□□ -1.54
BDNFP23560 DEFB109D-201ENST00000529497 240 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.41□□□□□ -1.54
BDNFP23560 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.41□□□□□ -1.54
BDNFP23560 LINC02185-201ENST00000575424 760 ntTSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 UBA2-208ENST00000592791 910 ntTSL 2 BASIC5.41□□□□□ -1.54
BDNFP23560 AC069304.3-201ENST00000603938 1084 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AL445493.3-201ENST00000619568 477 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AC015804.1-201ENST00000622935 435 ntBASIC5.41□□□□□ -1.54
BDNFP23560 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC5.41□□□□□ -1.54
BDNFP23560 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC5.41□□□□□ -1.54
BDNFP23560 ZNF418-205ENST00000595830 3543 ntAPPRIS P3 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 ACADSB-201ENST00000358776 5859 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
BDNFP23560 EEF1A1P36-201ENST00000427807 1351 ntBASIC5.41□□□□□ -1.54
BDNFP23560 XPOTP1-201ENST00000443317 2398 ntBASIC5.41□□□□□ -1.54
BDNFP23560 AC138393.1-206ENST00000540997 1886 ntBASIC5.41□□□□□ -1.54
BDNFP23560 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
BDNFP23560 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC5.4□□□□□ -1.54
BDNFP23560 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
BDNFP23560 LINC02516-201ENST00000563724 1771 ntTSL 2 BASIC5.4□□□□□ -1.54
BDNFP23560 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
BDNFP23560 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.4□□□□□ -1.54
BDNFP23560 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC5.4□□□□□ -1.54
BDNFP23560 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC5.4□□□□□ -1.54
BDNFP23560 SNORA48.4-201ENST00000391089 134 ntBASIC5.4□□□□□ -1.54
BDNFP23560 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.4□□□□□ -1.54
BDNFP23560 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 NPM1P34-201ENST00000428821 893 ntBASIC5.4□□□□□ -1.54
BDNFP23560 ELOCP6-201ENST00000429066 328 ntBASIC5.4□□□□□ -1.54
BDNFP23560 HSPD1P12-201ENST00000429127 1069 ntBASIC5.4□□□□□ -1.54
BDNFP23560 RPL17P35-201ENST00000432217 549 ntBASIC5.4□□□□□ -1.54
BDNFP23560 VN1R54P-201ENST00000435210 1049 ntBASIC5.4□□□□□ -1.54
BDNFP23560 RPL5P25-201ENST00000441148 775 ntBASIC5.4□□□□□ -1.54
BDNFP23560 RNFT1P2-201ENST00000443064 757 ntBASIC5.4□□□□□ -1.54
BDNFP23560 SBDSP1-204ENST00000453858 737 ntBASIC5.4□□□□□ -1.54
BDNFP23560 ELOCP12-201ENST00000458706 328 ntBASIC5.4□□□□□ -1.54
BDNFP23560 RN7SL443P-201ENST00000464331 290 ntBASIC5.4□□□□□ -1.54
BDNFP23560 VPS13A-211ENST00000484581 1155 ntTSL 2 BASIC5.4□□□□□ -1.54
BDNFP23560 LNCSRLR-201ENST00000490375 709 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 LINC01612-201ENST00000504509 469 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 AC133963.2-201ENST00000513686 578 ntBASIC5.4□□□□□ -1.54
BDNFP23560 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 AC138832.1-201ENST00000522871 556 ntBASIC5.4□□□□□ -1.54
BDNFP23560 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC5.4□□□□□ -1.54
BDNFP23560 AC084291.1-201ENST00000544667 548 ntTSL 2 BASIC5.4□□□□□ -1.54
BDNFP23560 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
BDNFP23560 LINC02325-202ENST00000554260 567 ntTSL 4 BASIC5.4□□□□□ -1.54
BDNFP23560 LINC02303-202ENST00000554711 531 ntTSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 ATP5F1P7-201ENST00000567330 760 ntBASIC5.4□□□□□ -1.54
BDNFP23560 MIR4436B2-201ENST00000581415 91 ntBASIC5.4□□□□□ -1.54
BDNFP23560 AC233702.9-201ENST00000581528 203 ntBASIC5.4□□□□□ -1.54
BDNFP23560 MIR4436B1-201ENST00000583272 91 ntBASIC5.4□□□□□ -1.54
BDNFP23560 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.4□□□□□ -1.54
BDNFP23560 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC5.4□□□□□ -1.54
BDNFP23560 AC105254.2-201ENST00000603636 436 ntBASIC5.4□□□□□ -1.54
BDNFP23560 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC5.4□□□□□ -1.54
BDNFP23560 AC017104.5-201ENST00000637647 639 ntBASIC5.4□□□□□ -1.54
BDNFP23560 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC5.4□□□□□ -1.55
BDNFP23560 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
BDNFP23560 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.4□□□□□ -1.55
BDNFP23560 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.55
BDNFP23560 RABGAP1L-206ENST00000367688 1425 ntTSL 2 BASIC5.4□□□□□ -1.55
BDNFP23560 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC5.4□□□□□ -1.55
BDNFP23560 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 ENSAP3-201ENST00000312710 333 ntBASIC5.39□□□□□ -1.55
BDNFP23560 RN7SKP104-201ENST00000362605 328 ntBASIC5.39□□□□□ -1.55
BDNFP23560 RNU6-609P-201ENST00000365459 107 ntBASIC5.39□□□□□ -1.55
BDNFP23560 CFAP126-201ENST00000367974 774 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 MIR550A3-201ENST00000390735 95 ntBASIC5.39□□□□□ -1.55
BDNFP23560 SYCP3-202ENST00000392924 845 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
BDNFP23560 RPL23AP59-201ENST00000399415 461 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AGR3-202ENST00000402239 563 ntTSL 2 BASIC5.39□□□□□ -1.55
BDNFP23560 AC098820.3-201ENST00000414135 976 ntTSL 3 BASIC5.39□□□□□ -1.55
BDNFP23560 AC079809.1-201ENST00000415468 276 ntBASIC5.39□□□□□ -1.55
BDNFP23560 AL357078.2-201ENST00000416486 427 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms