Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 RN7SKP149-201ENST00000363008 344 ntBASIC4.81□□□□□ -1.64
MSH3P20585 SNORA58B-201ENST00000364259 136 ntBASIC4.81□□□□□ -1.64
MSH3P20585 DSCR8-202ENST00000400477 534 ntAPPRIS ALT2 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH3P20585 RNA5SP345-201ENST00000410646 108 ntBASIC4.81□□□□□ -1.64
MSH3P20585 RN7SKP247-201ENST00000411094 308 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AL020994.2-201ENST00000413244 571 ntTSL 4 BASIC4.81□□□□□ -1.64
MSH3P20585 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 AL445644.1-201ENST00000436524 751 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 PA2G4P6-201ENST00000438325 1197 ntBASIC4.81□□□□□ -1.64
MSH3P20585 RPL31P44-201ENST00000447680 377 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AL591363.1-201ENST00000450091 483 ntBASIC4.81□□□□□ -1.64
MSH3P20585 CLIC4P1-201ENST00000453177 535 ntBASIC4.81□□□□□ -1.64
MSH3P20585 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC4.81□□□□□ -1.64
MSH3P20585 NPM1P17-201ENST00000479221 602 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC138965.1-202ENST00000502354 547 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 AC140125.3-201ENST00000505248 547 ntTSL 4 BASIC4.81□□□□□ -1.64
MSH3P20585 RPS27AP18-201ENST00000515536 459 ntBASIC4.81□□□□□ -1.64
MSH3P20585 RNU6-415P-201ENST00000516252 97 ntBASIC4.81□□□□□ -1.64
MSH3P20585 RNU6-334P-201ENST00000517072 102 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 AC099520.1-205ENST00000524083 316 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 MORF4L1P3-201ENST00000525966 950 ntBASIC4.81□□□□□ -1.64
MSH3P20585 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 AC034102.2-201ENST00000548861 489 ntAPPRIS P1 TSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC4.81□□□□□ -1.64
MSH3P20585 BGLT3-201ENST00000564523 994 ntBASIC4.81□□□□□ -1.64
MSH3P20585 CYCSP40-201ENST00000575927 294 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC134669.2-201ENST00000578584 1008 ntAPPRIS P1 TSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 AC023394.1-201ENST00000578673 312 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 AC007448.1-201ENST00000582714 234 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 AF129408.1-201ENST00000608767 431 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC004241.3-201ENST00000611728 517 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AL445528.2-201ENST00000620582 470 ntBASIC4.81□□□□□ -1.64
MSH3P20585 CR381572.2-201ENST00000624852 397 ntBASIC4.81□□□□□ -1.64
MSH3P20585 AC107068.2-201ENST00000634611 447 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 RBMS3-AS3-202ENST00000635847 738 ntTSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 ZNF679-202ENST00000421025 1567 ntAPPRIS P1 TSL 1 (best) BASIC4.81□□□□□ -1.64
MSH3P20585 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC4.81□□□□□ -1.64
MSH3P20585 ADGRG4-201ENST00000370652 9820 ntAPPRIS P2 TSL 5 BASIC4.81□□□□□ -1.64
MSH3P20585 A2MP1-204ENST00000566278 4130 ntBASIC4.81□□□□□ -1.64
MSH3P20585 IL23R-202ENST00000395227 1459 ntTSL 3 BASIC4.81□□□□□ -1.64
MSH3P20585 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 DDX18P5-201ENST00000534547 1306 ntBASIC4.8□□□□□ -1.64
MSH3P20585 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 UBR1-201ENST00000290650 7761 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 ADNP-201ENST00000349014 5963 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH3P20585 AL034370.1-201ENST00000397254 1590 ntBASIC4.8□□□□□ -1.64
MSH3P20585 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH3P20585 MIR550A3-201ENST00000390735 95 ntBASIC4.8□□□□□ -1.64
MSH3P20585 KRTAP3-2-201ENST00000391587 702 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
MSH3P20585 ZNF365-203ENST00000395249 433 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 GSTA12P-201ENST00000402398 508 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AP000580.1-201ENST00000404439 358 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC069282.1-201ENST00000411911 526 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC114755.2-201ENST00000413520 361 ntBASIC4.8□□□□□ -1.64
MSH3P20585 VN1R37P-201ENST00000419096 748 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH3P20585 AL590762.4-201ENST00000425885 253 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AL512661.1-201ENST00000434586 1253 ntBASIC4.8□□□□□ -1.64
MSH3P20585 NMNAT1P2-201ENST00000435192 860 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC024084.1-201ENST00000440744 455 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 LINC01075-201ENST00000455977 370 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH3P20585 RPS3AP41-201ENST00000462701 778 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC112206.1-201ENST00000468416 477 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH3P20585 RNU6-709P-201ENST00000517257 104 ntBASIC4.8□□□□□ -1.64
MSH3P20585 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH3P20585 AC138701.1-201ENST00000524329 714 ntBASIC4.8□□□□□ -1.64
MSH3P20585 C1DP5-201ENST00000525775 383 ntBASIC4.8□□□□□ -1.64
MSH3P20585 BRD9P1-201ENST00000529855 560 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.8□□□□□ -1.64
MSH3P20585 AC009117.1-201ENST00000563948 554 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC009139.2-201ENST00000569032 566 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 AC145207.6-201ENST00000579981 782 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 AL109935.2-201ENST00000587737 395 ntTSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC4.8□□□□□ -1.64
MSH3P20585 BMS1P7-201ENST00000602440 1052 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AL121932.1-201ENST00000605542 214 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC017076.1-201ENST00000607613 578 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC007497.1-201ENST00000610421 561 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC016597.2-201ENST00000613256 341 ntBASIC4.8□□□□□ -1.64
MSH3P20585 C7orf77-201ENST00000616258 548 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 AC018926.1-201ENST00000616335 435 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC022960.3-201ENST00000619794 441 ntBASIC4.8□□□□□ -1.64
MSH3P20585 AC087385.3-201ENST00000620477 187 ntBASIC4.8□□□□□ -1.64
MSH3P20585 CSRNP3-201ENST00000314499 11788 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
MSH3P20585 KIAA0586-202ENST00000354386 5226 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
MSH3P20585 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
MSH3P20585 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 116.4 ms