Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 RAD51AP1-213ENST00000544927 787 ntTSL 4 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 ZNF836-203ENST00000597065 808 ntTSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AC007620.3-201ENST00000608131 497 ntBASIC8.79□□□□□ -1
SHROOM4Q9ULL8 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC8.79□□□□□ -1
SHROOM4Q9ULL8 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 SCN2A-207ENST00000631182 8430 ntAPPRIS ALT1 TSL 5 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AC073136.1-201ENST00000449426 2884 ntBASIC8.78□□□□□ -1
SHROOM4Q9ULL8 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 EBLN1-201ENST00000422359 1208 ntAPPRIS P1 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AL451140.1-201ENST00000430534 371 ntTSL 3 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AL049830.4-201ENST00000555149 351 ntBASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AP005019.3-201ENST00000620418 560 ntBASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC8.78□□□□□ -1
SHROOM4Q9ULL8 SAR1A-201ENST00000373236 437 ntTSL 1 (best) BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 RNU6-152P-201ENST00000384037 107 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC011933.1-201ENST00000413334 321 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 RPL5P2-201ENST00000429598 854 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 MRPS33P4-201ENST00000434892 317 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 ARAFP2-201ENST00000440565 559 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC116533.1-201ENST00000459748 321 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC041039.1-201ENST00000485656 536 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC016598.2-201ENST00000514942 525 ntTSL 5 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 Y_RNA.719-201ENST00000517156 106 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AP000873.2-205ENST00000529031 435 ntTSL 2 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 AC074029.2-201ENST00000551045 634 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 IGKV2OR2-2-201ENST00000605025 300 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 RNA5SP439-201ENST00000617595 124 ntBASIC8.77□□□□□ -1
SHROOM4Q9ULL8 LRMP-201ENST00000354454 2504 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1
SHROOM4Q9ULL8 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 MIR554-201ENST00000384874 96 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 CYCSP19-201ENST00000411715 316 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 AC073073.1-201ENST00000493920 463 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 AC105031.1-201ENST00000518550 476 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 LINC02443-204ENST00000544717 754 ntTSL 5 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 ATXN3-251ENST00000617719 1074 ntTSL 5 BASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 RMST_5.1-201ENST00000618704 126 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 MIR3653-201ENST00000625572 110 ntBASIC8.77□□□□□ -1.01
SHROOM4Q9ULL8 DNAJC16-210ENST00000616884 5882 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 HSFY1P1-202ENST00000425038 1381 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 RAD51AP1-202ENST00000352618 2113 ntAPPRIS P3 TSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 RNU6-1263P-201ENST00000384601 106 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 ATP5F1P3-201ENST00000397213 657 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 E2F6P2-201ENST00000420708 748 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 BTBD7P2-201ENST00000441962 620 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 RPL23AP53-201ENST00000521854 457 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 AC021242.2-201ENST00000522765 454 ntTSL 3 BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 AC134312.3-201ENST00000566155 213 ntTSL 2 BASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 RN7SL703P-201ENST00000578485 302 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 VN2R3P-201ENST00000422626 1412 ntBASIC8.76□□□□□ -1.01
SHROOM4Q9ULL8 A1CF-206ENST00000395489 9517 ntTSL 2 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 AL592182.3-201ENST00000642132 3304 ntBASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 SYTL2-213ENST00000525702 2727 ntTSL 1 (best) BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 MEIOB-201ENST00000325962 1694 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 AL138820.1-201ENST00000617901 5305 ntBASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 AL035425.3-201ENST00000564206 4996 ntBASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 PPARGC1A-201ENST00000264867 6318 ntAPPRIS P1 TSL 1 (best) BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 VCAN-201ENST00000265077 12625 ntAPPRIS P3 TSL 1 (best) BASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 CCAT2-201ENST00000630920 1752 ntBASIC8.75□□□□□ -1.01
SHROOM4Q9ULL8 SPRR2C-201ENST00000290702 219 ntBASIC8.75□□□□□ -1.01
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms