Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 PTP4A1P3-201ENST00000433661 420 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 GTF3AP5-201ENST00000442645 697 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC011753.3-201ENST00000443436 406 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 CEACAMP6-201ENST00000452007 574 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 RPS29P33-201ENST00000456717 146 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC068756.1-201ENST00000482003 403 ntTSL 2 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 RPL36AP41-201ENST00000493820 306 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC008897.1-201ENST00000494006 347 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 HMGB1P3-201ENST00000502802 616 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC118282.1-201ENST00000506408 765 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 THUMPD3-AS1-210ENST00000519043 1115 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC104115.2-201ENST00000523026 687 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC007014.1-201ENST00000572828 610 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 CXXC1P1-203ENST00000589302 746 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC119501.1-201ENST00000603646 475 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 QTRT1P1-201ENST00000604344 1078 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AL356056.1-205ENST00000608904 651 ntTSL 5 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AL096803.3-201ENST00000609032 532 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC015922.4-201ENST00000612568 690 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 uc_338.18-201ENST00000615451 175 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AL122125.1-201ENST00000616999 600 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 LYRM2-211ENST00000626778 696 ntTSL 5 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC006927.4-201ENST00000639187 543 ntBASIC5.06□□□□□ -1.6
SIX4Q9UIU6 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 STAMBPL1-202ENST00000371924 2208 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 PCDH15-217ENST00000414778 9234 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 PCDH15-227ENST00000614895 9249 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 JCHAIN-201ENST00000254801 1438 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
SIX4Q9UIU6 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 SLC9C1-201ENST00000305815 4172 ntAPPRIS P3 TSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CYP3A43-203ENST00000342499 1396 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 SPART-202ENST00000438666 4789 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 RNA5SP505-201ENST00000364748 108 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MANSC4-201ENST00000381273 1023 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CDKL4-202ENST00000395035 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 PIGP-204ENST00000399102 688 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MIR298-201ENST00000401212 88 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MAST4-207ENST00000407621 559 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 GLS-204ENST00000409428 816 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 RN7SKP106-201ENST00000410832 272 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL024507.1-201ENST00000412741 274 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ARPP21-AS1-201ENST00000415706 542 ntTSL 4 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 LINC01661-201ENST00000415910 708 ntTSL 3 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 MTND4LP13-201ENST00000425022 298 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC113331.1-201ENST00000428160 869 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CD200R1-203ENST00000440122 847 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL157884.3-201ENST00000448273 1184 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CCRL1P1-201ENST00000449542 1053 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC006148.2-201ENST00000467017 650 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 RPS29P22-201ENST00000472363 168 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 KRTAP5-14P-201ENST00000502328 121 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 GTF2IP9-201ENST00000502460 301 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CDH12P4-201ENST00000517835 295 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CDH12P3-201ENST00000517935 295 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 CDH12P1-201ENST00000518435 295 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC087439.2-201ENST00000519498 552 ntTSL 3 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL161757.2-201ENST00000553800 421 ntTSL 3 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AL358913.1-201ENST00000554342 121 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC068620.3-201ENST00000602749 560 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC008993.2-201ENST00000631744 806 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC099654.9-201ENST00000637055 678 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 TMEM30CP-203ENST00000637814 1035 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 OR5AC4P-202ENST00000642086 985 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 TPTE2-205ENST00000400230 1793 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ZEB1-205ENST00000446923 6267 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 AC005005.4-201ENST00000623789 16698 ntBASIC5.05□□□□□ -1.6
SIX4Q9UIU6 TANK-205ENST00000405852 2155 ntTSL 5 BASIC5.05□□□□□ -1.6
SIX4Q9UIU6 ALB-214ENST00000509063 1911 ntTSL 5 BASIC5.05□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms