Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AL162425.1-201ENST00000423637 1525 ntTSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AC120338.1-201ENST00000625074 1541 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 VDAC3-201ENST00000022615 1355 ntAPPRIS P3 TSL 1 (best) BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 MTND4P21-201ENST00000453886 1357 ntBASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC6.54□□□□□ -1.36
CHMP4AQ9BY43 RMDN2-207ENST00000417700 1426 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 ALB-219ENST00000621085 1418 ntTSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 SNORA2.3-201ENST00000383920 135 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AL021331.1-201ENST00000402817 582 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC004022.2-201ENST00000413824 193 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC016769.2-201ENST00000414815 475 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 GJA6P-201ENST00000415117 1042 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 DIAPH2-AS1-201ENST00000439759 971 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 CNTN4-AS2-201ENST00000447256 426 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 OR52E3P-201ENST00000452083 936 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 LINC01753-201ENST00000458145 631 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 HESX1-202ENST00000473921 757 ntTSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC083829.1-201ENST00000503756 657 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 NDUFB5P1-201ENST00000508134 564 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 OR5H4P-201ENST00000510851 923 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 LINC02483-201ENST00000512043 1143 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 LINC02429-202ENST00000513836 694 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC027031.1-201ENST00000517318 489 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC009884.1-201ENST00000522670 545 ntTSL 4 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 OR5AZ1P-201ENST00000527448 943 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 OR5D15P-201ENST00000531671 942 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC027369.5-201ENST00000533838 755 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 C8orf59-206ENST00000545322 491 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC087897.2-201ENST00000552639 678 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 LINC02316-201ENST00000553346 768 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 SYNE2-210ENST00000553455 674 ntTSL 2 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AL358333.1-201ENST00000555115 467 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC233702.9-201ENST00000581528 203 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC067852.4-201ENST00000590314 478 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 BNIP3P35-201ENST00000604530 490 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AP001521.2-201ENST00000608772 546 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 SPOCK3-225ENST00000535728 2007 ntAPPRIS ALT2 TSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 AC046144.1-201ENST00000478559 1853 ntBASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 FGF12-204ENST00000445105 5406 ntTSL 1 (best) BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC6.53□□□□□ -1.36
CHMP4AQ9BY43 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC6.52□□□□□ -1.36
CHMP4AQ9BY43 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.36
CHMP4AQ9BY43 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 DCAF13P3-201ENST00000561147 1334 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 IL1RAPL2-201ENST00000344799 1290 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 C1orf105-201ENST00000367725 888 ntTSL 2 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 RNU6-1279P-201ENST00000383917 103 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 DAB1-AS1-201ENST00000416598 1262 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 SETP12-201ENST00000514068 805 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 UBE2Q2P10-201ENST00000514854 900 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AP001574.1-201ENST00000519566 546 ntTSL 4 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 DEFB109D-201ENST00000529497 240 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC117505.1-202ENST00000547027 566 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC022196.1-202ENST00000559570 462 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC022884.2-201ENST00000578535 580 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC005324.5-201ENST00000584540 571 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 TTN-AS1-217ENST00000585625 945 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AP005432.2-201ENST00000608162 586 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 FAM133A-201ENST00000322139 3292 ntAPPRIS P1 TSL 4 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 AC025031.4-201ENST00000621248 3271 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 ZNF33CP-201ENST00000432492 2030 ntBASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC6.52□□□□□ -1.37
CHMP4AQ9BY43 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 INTS6P1-201ENST00000504674 2530 ntBASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 ZRANB3-201ENST00000264159 4046 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
CHMP4AQ9BY43 SNORA58B-201ENST00000364259 136 ntBASIC6.51□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms