Protein–RNA interactions for Protein: Q8IVD9

NUDCD3, NudC domain-containing protein 3, humanhuman

Predictions only

Length 361 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUDCD3Q8IVD9 TRAV11-201ENST00000539512 339 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AL049874.4-201ENST00000557593 255 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC012409.1-201ENST00000560176 358 ntTSL 3 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC002091.1-201ENST00000578788 557 ntTSL 2 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC024267.4-202ENST00000582631 436 ntTSL 2 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC011487.3-201ENST00000593607 453 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 GMCL1P2-201ENST00000605230 823 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC012213.4-201ENST00000606457 354 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC015813.4-201ENST00000610469 179 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 MIR548A1HG-201ENST00000636739 558 ntTSL 4 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 ANKRD36C-202ENST00000456556 5428 ntAPPRIS P1 TSL 5 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 ASNSP1-201ENST00000518311 1939 ntBASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 TMEM106B-201ENST00000396667 12539 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 LINC01102-204ENST00000451400 3778 ntTSL 2 BASIC4.48□□□□□ -1.69
NUDCD3Q8IVD9 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 CENPI-201ENST00000372926 2375 ntAPPRIS ALT2 TSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC139769.1-204ENST00000472297 1931 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 RN7SKP269-201ENST00000365545 319 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 RNU1-106P-201ENST00000384382 164 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC140479.3-201ENST00000418944 1126 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AL355433.1-201ENST00000422804 300 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AL022310.1-201ENST00000436974 690 ntTSL 2 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 HLA-N-201ENST00000437516 135 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MYO5BP2-201ENST00000449815 1277 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 DDX39BP2-208ENST00000453923 258 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 SCARNA10-201ENST00000459255 330 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 HMGN1P8-201ENST00000463578 288 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC104763.1-201ENST00000475274 360 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC098851.1-201ENST00000476561 570 ntTSL 4 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC109462.1-201ENST00000491087 368 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 RPL36AP41-201ENST00000493820 306 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC006499.6-201ENST00000511169 607 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 HMGB3P13-201ENST00000511263 607 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MYL12AP1-201ENST00000518490 515 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 CYP4A43P-201ENST00000568156 121 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MIR3691-201ENST00000578066 90 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MIR1269B-201ENST00000580405 75 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC090312.1-201ENST00000580637 348 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 RPL38-208ENST00000584577 344 ntAPPRIS ALT1 TSL 3 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AC008794.2-201ENST00000587779 293 ntTSL 2 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 SUMO2P15-201ENST00000604285 278 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MIR6862-1-201ENST00000613016 70 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 MIR6862-2-201ENST00000614755 70 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 AL158196.1-201ENST00000616786 434 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 SMCR2_2.1-201ENST00000619783 161 ntBASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 SNAP23-222ENST00000626061 237 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 SNAP23-223ENST00000627440 210 ntTSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 OR8D1-203ENST00000641897 8285 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 NLGN1-206ENST00000457714 8242 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
NUDCD3Q8IVD9 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC4.46□□□□□ -1.69
NUDCD3Q8IVD9 AC090971.4-201ENST00000560291 1800 ntBASIC4.46□□□□□ -1.69
NUDCD3Q8IVD9 DNAH6-201ENST00000237449 12666 ntAPPRIS P1 TSL 5 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 CDR1-201ENST00000370532 2467 ntAPPRIS P1 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 ARL15-202ENST00000504924 2486 ntAPPRIS P2 TSL 1 (best) BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 ARL15-207ENST00000620747 2486 ntAPPRIS ALT1 TSL 5 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 RAPH1-203ENST00000374493 3909 ntAPPRIS ALT2 TSL 5 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 RNU6-386P-201ENST00000362650 107 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 FAIM-204ENST00000393035 946 ntAPPRIS P3 TSL 1 (best) BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 CHMP1B2P-201ENST00000399581 597 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 LAP3P1-201ENST00000403648 294 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 TRIM60P17-201ENST00000415181 719 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 AC093162.1-201ENST00000419682 124 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 AC092570.3-201ENST00000420113 693 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 GNRH1-202ENST00000421054 470 ntAPPRIS P1 TSL 1 (best) BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 RAD23BP1-201ENST00000421404 1227 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 CYCSP11-201ENST00000436426 315 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 LINC00704-203ENST00000449712 703 ntTSL 3 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 VN1R32P-201ENST00000452234 905 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 snoU13.20-201ENST00000459180 104 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 PGBD4P4-201ENST00000509673 613 ntBASIC4.46□□□□□ -1.7
NUDCD3Q8IVD9 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.46□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 89.3 ms