Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 RN7SL41P-201ENST00000476144 297 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 RN7SL817P-201ENST00000480777 288 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 RNA5SP446-201ENST00000515955 82 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 RNU2-30P-201ENST00000516209 141 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC027701.1-202ENST00000520988 459 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 LINC00944-201ENST00000536517 421 ntTSL 2 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 TRDN-204ENST00000542443 1294 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC063949.1-201ENST00000552900 865 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC005692.2-201ENST00000566521 596 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC027455.1-201ENST00000574104 594 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC115522.1-201ENST00000595680 556 ntTSL 4 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC096586.2-201ENST00000610260 441 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC140113.4-201ENST00000622087 222 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC004232.3-201ENST00000622977 525 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 GOLT1B-210ENST00000631252 223 ntTSL 3 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AC138627.1-204ENST00000641894 765 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 PRKAA2-202ENST00000610361 9280 ntAPPRIS ALT1 TSL 5 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 STK33-208ENST00000447869 3103 ntAPPRIS P1 TSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 SAMSN1-201ENST00000285670 2185 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 HSPA8P17-201ENST00000427029 1382 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC3.49□□□□□ -1.85
HLA-DMBP28068 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC3.49□□□□□ -1.85
HLA-DMBP28068 AL133243.3-201ENST00000617415 3004 ntBASIC3.49□□□□□ -1.85
HLA-DMBP28068 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 DAZ1-205ENST00000540248 3268 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 IQCM-206ENST00000636793 1900 ntAPPRIS P5 TSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC139713.2-209ENST00000509873 1303 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 EYA4-202ENST00000355286 4317 ntAPPRIS ALT1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 OR8J3-203ENST00000641913 3047 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC018529.3-201ENST00000624212 2254 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 MIR921-201ENST00000401133 56 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 Y_RNA.625-201ENST00000411256 107 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL359378.2-201ENST00000415575 746 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 RPL26P29-201ENST00000415623 438 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL590609.2-201ENST00000421430 368 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC004448.2-201ENST00000422360 586 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 RPL21P91-201ENST00000429231 479 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 ARL6IP1P2-201ENST00000431356 563 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 RAB9AP5-201ENST00000437794 597 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL354794.1-201ENST00000442103 516 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 CEACAMP9-201ENST00000442990 513 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 RAB9AP2-201ENST00000443911 597 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC108463.1-201ENST00000450258 347 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 OR52Y1P-201ENST00000452418 828 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC092832.2-201ENST00000456621 389 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC007000.3-201ENST00000459742 617 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 RN7SL738P-201ENST00000470264 297 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC025164.1-201ENST00000496249 478 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 SCARNA22-201ENST00000503991 125 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC098799.3-201ENST00000506095 438 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 VWA8P1-201ENST00000510889 176 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 MTCYBP19-201ENST00000517463 1124 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 CYCSP28-201ENST00000534284 321 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC004801.3-201ENST00000547602 962 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC137768.1-201ENST00000549998 553 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 MIR4330-201ENST00000579077 105 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AP000919.3-201ENST00000582591 568 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC091178.1-203ENST00000584586 279 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AP005131.3-201ENST00000590042 665 ntTSL 3 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL391358.1-201ENST00000605342 190 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC008966.2-201ENST00000606157 453 ntBASIC3.48□□□□□ -1.85
HLA-DMBP28068 AL137078.2-201ENST00000615740 318 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 TRIM36-209ENST00000514154 1952 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 ZNF510-201ENST00000223428 5154 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.48□□□□□ -1.85
HLA-DMBP28068 MYOZ2-201ENST00000307128 2597 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
HLA-DMBP28068 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
Retrieved 100 of 98,524 protein–RNA pairs in 91.5 ms