Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 LINC01902-202ENST00000636983 4607 ntTSL 5 BASIC4.32□□□□□ -1.72
TNFP01375 STON1-GTF2A1L-204ENST00000405008 3821 ntAPPRIS P1 TSL 5 BASIC4.32□□□□□ -1.72
TNFP01375 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC4.32□□□□□ -1.72
TNFP01375 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TNFP01375 AL022393.1-201ENST00000625142 1677 ntBASIC4.32□□□□□ -1.72
TNFP01375 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 MPDZ-211ENST00000536827 6176 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 VPS13C-201ENST00000249837 13300 ntAPPRIS P3 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.31□□□□□ -1.72
TNFP01375 PPP1R9A-205ENST00000424654 4058 ntTSL 5 BASIC4.31□□□□□ -1.72
TNFP01375 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.31□□□□□ -1.72
TNFP01375 RNU1-132P-201ENST00000364300 164 ntBASIC4.31□□□□□ -1.72
TNFP01375 RPS26P8-201ENST00000393490 348 ntBASIC4.31□□□□□ -1.72
TNFP01375 ST13P16-201ENST00000401760 781 ntBASIC4.31□□□□□ -1.72
TNFP01375 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.31□□□□□ -1.72
TNFP01375 AL139095.3-201ENST00000419672 1203 ntBASIC4.31□□□□□ -1.72
TNFP01375 RPL23AP38-201ENST00000423801 469 ntBASIC4.31□□□□□ -1.72
TNFP01375 AC004975.1-201ENST00000428733 208 ntBASIC4.31□□□□□ -1.72
TNFP01375 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 NFYAP1-201ENST00000431953 972 ntBASIC4.31□□□□□ -1.72
TNFP01375 AL162419.1-201ENST00000440674 873 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 AL031584.1-201ENST00000447169 754 ntBASIC4.31□□□□□ -1.72
TNFP01375 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC4.31□□□□□ -1.72
TNFP01375 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 RN7SKP46-201ENST00000515942 234 ntBASIC4.31□□□□□ -1.72
TNFP01375 MRPL49P2-201ENST00000521066 465 ntBASIC4.31□□□□□ -1.72
TNFP01375 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC4.31□□□□□ -1.72
TNFP01375 AC007424.1-205ENST00000552615 579 ntTSL 4 BASIC4.31□□□□□ -1.72
TNFP01375 AC026462.4-201ENST00000565229 951 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 LINC00511-212ENST00000581183 657 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 LRRC2-AS1-202ENST00000614743 633 ntTSL 3 BASIC4.31□□□□□ -1.72
TNFP01375 C2orf91-203ENST00000615044 393 ntAPPRIS ALT2 TSL 5 BASIC4.31□□□□□ -1.72
TNFP01375 MILR1-203ENST00000615220 1196 ntAPPRIS P3 TSL 2 BASIC4.31□□□□□ -1.72
TNFP01375 AL023881.1-201ENST00000621088 301 ntBASIC4.31□□□□□ -1.72
TNFP01375 PATJ-202ENST00000316485 3657 ntTSL 5 BASIC4.31□□□□□ -1.72
TNFP01375 AP001642.1-201ENST00000624727 2117 ntBASIC4.31□□□□□ -1.72
TNFP01375 GABRG2-217ENST00000639384 5360 ntTSL 5 BASIC4.31□□□□□ -1.72
TNFP01375 AL158163.1-201ENST00000603915 1649 ntBASIC4.31□□□□□ -1.72
TNFP01375 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC4.31□□□□□ -1.72
TNFP01375 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 LINC01375-201ENST00000428485 1860 ntTSL 2 BASIC4.3□□□□□ -1.72
TNFP01375 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 RNA5SP175-201ENST00000364275 119 ntBASIC4.3□□□□□ -1.72
TNFP01375 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.3□□□□□ -1.72
TNFP01375 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC4.3□□□□□ -1.72
TNFP01375 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 AC009963.2-201ENST00000453431 138 ntBASIC4.3□□□□□ -1.72
TNFP01375 DDX39BP2-208ENST00000453923 258 ntBASIC4.3□□□□□ -1.72
TNFP01375 AL672167.3-201ENST00000465951 960 ntBASIC4.3□□□□□ -1.72
TNFP01375 OR11I1P-201ENST00000486033 954 ntBASIC4.3□□□□□ -1.72
TNFP01375 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.3□□□□□ -1.72
TNFP01375 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC4.3□□□□□ -1.72
TNFP01375 AC009652.2-201ENST00000527978 516 ntTSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 AL109766.1-201ENST00000555080 552 ntBASIC4.3□□□□□ -1.72
TNFP01375 AC023034.1-201ENST00000558141 518 ntTSL 3 BASIC4.3□□□□□ -1.72
TNFP01375 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.3□□□□□ -1.72
TNFP01375 RN7SL176P-201ENST00000580352 264 ntBASIC4.3□□□□□ -1.72
TNFP01375 RN7SL435P-201ENST00000584418 282 ntBASIC4.3□□□□□ -1.72
TNFP01375 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC4.3□□□□□ -1.72
TNFP01375 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC4.3□□□□□ -1.72
TNFP01375 AC090181.2-201ENST00000602975 672 ntBASIC4.3□□□□□ -1.72
TNFP01375 AC068724.3-201ENST00000625906 87 ntBASIC4.3□□□□□ -1.72
TNFP01375 DLG1-217ENST00000452595 3053 ntTSL 2 BASIC4.3□□□□□ -1.72
TNFP01375 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.3□□□□□ -1.72
TNFP01375 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.3□□□□□ -1.72
TNFP01375 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.3□□□□□ -1.72
TNFP01375 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TNFP01375 AC093591.2-201ENST00000565254 3843 ntBASIC4.29□□□□□ -1.72
TNFP01375 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TNFP01375 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.29□□□□□ -1.72
TNFP01375 ALG14-201ENST00000370205 9367 ntAPPRIS P1 TSL 1 (best) BASIC4.29□□□□□ -1.72
TNFP01375 MIR383-201ENST00000362257 73 ntBASIC4.29□□□□□ -1.72
TNFP01375 NFIB-203ENST00000380934 2142 ntTSL 2 BASIC4.29□□□□□ -1.72
TNFP01375 AL358176.3-201ENST00000420757 454 ntBASIC4.29□□□□□ -1.72
TNFP01375 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC4.29□□□□□ -1.72
TNFP01375 RPS27AP12-201ENST00000429552 465 ntBASIC4.29□□□□□ -1.72
TNFP01375 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.29□□□□□ -1.72
TNFP01375 RPL34P6-201ENST00000432390 345 ntBASIC4.29□□□□□ -1.72
TNFP01375 RPL23AP52-201ENST00000439311 478 ntBASIC4.29□□□□□ -1.72
TNFP01375 AL512326.1-201ENST00000443050 721 ntBASIC4.29□□□□□ -1.72
TNFP01375 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC4.29□□□□□ -1.72
TNFP01375 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.29□□□□□ -1.72
TNFP01375 NUTF2P7-201ENST00000453086 375 ntBASIC4.29□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 89.8 ms