Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 GJA1-201ENST00000282561 3037 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 NCOA4-205ENST00000583565 2371 ntAPPRIS P1 TSL 2 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 SPATA19-201ENST00000299140 861 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 LST1-211ENST00000376110 433 ntTSL 3 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 Y_RNA.518-201ENST00000384552 113 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 TRAV8-3-201ENST00000390435 341 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 FDPSP5-201ENST00000399474 1057 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 RPSAP42-201ENST00000403415 878 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 RAC1P4-201ENST00000419413 579 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AL035660.2-201ENST00000461248 556 ntTSL 2 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL89P-201ENST00000480252 283 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC004594.1-201ENST00000482375 463 ntTSL 3 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC034222.1-201ENST00000494052 532 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 RPL24-206ENST00000495401 478 ntTSL 2 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 CEACAMP10-202ENST00000495431 496 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC011726.3-201ENST00000518031 568 ntTSL 4 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 GYPA-211ENST00000535709 695 ntAPPRIS ALT2 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 MDM2-233ENST00000545204 398 ntTSL 5 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC090502.2-201ENST00000549267 280 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC079600.1-201ENST00000550326 297 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 BLID-201ENST00000560104 862 ntAPPRIS P1 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC093525.4-201ENST00000562232 459 ntTSL 5 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC084783.1-201ENST00000565846 910 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AL356432.3-201ENST00000568952 465 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AP005328.1-201ENST00000577719 681 ntTSL 3 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC117569.1-201ENST00000584482 739 ntTSL 3 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 RPL35AP25-201ENST00000584631 330 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC090699.1-201ENST00000586264 321 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF814-214ENST00000600634 461 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AL590560.2-201ENST00000608430 732 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC023509.5-201ENST00000617434 807 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 AC244100.1-201ENST00000618141 407 ntTSL 5 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 TSHR-201ENST00000298171 4400 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 SLC4A4-204ENST00000425175 7596 ntTSL 5 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 IFI44-201ENST00000370747 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 PDGFC-203ENST00000502773 4165 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 PRNCR1-201ENST00000635449 12727 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF292-202ENST00000369577 10610 ntAPPRIS P2 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 TRIM51HP-202ENST00000530412 1823 ntBASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 DNM1L-207ENST00000452533 4439 ntTSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 UTY-212ENST00000545955 6817 ntAPPRIS P5 TSL 1 (best) BASIC7.59□□□□□ -1.19
VPS9D1Q9Y2B5 LRRC28-201ENST00000301981 5971 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
VPS9D1Q9Y2B5 ACSL5-201ENST00000354273 3353 ntAPPRIS P1 TSL 1 (best) BASIC7.59□□□□□ -1.2
VPS9D1Q9Y2B5 DCX-203ENST00000371993 9231 ntAPPRIS ALT1 TSL 5 BASIC7.59□□□□□ -1.2
VPS9D1Q9Y2B5 MGAM-209ENST00000620571 6483 ntTSL 5 BASIC7.59□□□□□ -1.2
VPS9D1Q9Y2B5 GRID2-204ENST00000510992 2739 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 STXBP5-203ENST00000367480 3297 ntTSL 5 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 KIAA1958-203ENST00000536272 7650 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC244100.3-202ENST00000617328 1721 ntTSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC008147.2-201ENST00000552061 4713 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 LMO7-205ENST00000377534 4896 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 THUMPD3P1-201ENST00000506556 1480 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 FTO-206ENST00000471389 11766 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RPS20-205ENST00000519807 1826 ntTSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 SNORD46-201ENST00000364043 104 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 Y_RNA.274-201ENST00000364714 101 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 Y_RNA.416-201ENST00000384014 113 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RNU6-1140P-201ENST00000410517 106 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RNU2-14P-201ENST00000411053 191 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 GSTM3P2-201ENST00000412746 530 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 BX323014.1-201ENST00000412876 237 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 SNAP23P1-201ENST00000433229 246 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL138752.1-201ENST00000452964 351 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL353752.1-201ENST00000454946 260 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC109454.1-201ENST00000471205 498 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RN7SL685P-201ENST00000476271 298 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC015724.1-201ENST00000478577 156 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RPL21P42-201ENST00000488408 464 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC092436.1-201ENST00000506450 503 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 NR1I3-233ENST00000515452 1093 ntTSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 IGHV3-57-201ENST00000520143 280 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AP000880.1-202ENST00000526487 588 ntTSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 RAB30-205ENST00000527633 792 ntAPPRIS P1 TSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL590560.1-203ENST00000544342 408 ntAPPRIS ALT2 TSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC068446.3-201ENST00000555285 382 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL358334.3-201ENST00000557343 535 ntTSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 HNRNPA1P71-201ENST00000559135 950 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC114546.2-201ENST00000560683 477 ntTSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC099524.1-206ENST00000568131 407 ntTSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC105224.1-201ENST00000587055 421 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL109918.2-201ENST00000605188 279 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL354733.2-202ENST00000615485 742 ntTSL 5 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 Metazoa_SRP.123-201ENST00000616695 286 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 SPINK6-203ENST00000621437 605 ntAPPRIS P1 TSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AL138924.1-201ENST00000629067 415 ntTSL 3 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 AC097714.1-201ENST00000511272 1647 ntBASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 ZSCAN9-207ENST00000531979 1601 ntAPPRIS P3 TSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 ST7-213ENST00000432298 1956 ntTSL 2 BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 DCHS2-207ENST00000623607 8912 ntAPPRIS P2 TSL 1 (best) BASIC7.58□□□□□ -1.2
VPS9D1Q9Y2B5 LINC00536-201ENST00000505156 2692 ntTSL 1 (best) BASIC7.58□□□□□ -1.2
Retrieved 100 of 98,524 protein–RNA pairs in 101.3 ms