Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 AC016739.1-201ENST00000405359 345 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC005104.1-201ENST00000414896 442 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC015977.1-201ENST00000418887 292 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 BX284632.2-201ENST00000421091 399 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC017002.2-201ENST00000426124 792 ntTSL 2 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 FTO-202ENST00000431610 707 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 C1orf140-201ENST00000434398 645 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC242426.1-201ENST00000435270 960 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL512605.1-202ENST00000441919 381 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL359955.2-201ENST00000445380 353 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL162739.1-201ENST00000450606 307 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC246785.3-201ENST00000455105 314 ntTSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 ACA64.4-201ENST00000459070 127 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC094085.1-201ENST00000468914 584 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL122020.1-201ENST00000472287 459 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC068724.1-201ENST00000487100 792 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 Metazoa_SRP.158-201ENST00000487171 294 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC112198.1-201ENST00000505369 1220 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 HMGB3P13-201ENST00000511263 607 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 LINC02485-202ENST00000511899 770 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 Y_RNA.667-201ENST00000516212 107 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC008429.4-201ENST00000521201 182 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC022360.2-201ENST00000522390 456 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 MAL2-207ENST00000522828 603 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC090049.1-201ENST00000551075 1011 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC073591.1-201ENST00000552736 597 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AP001094.1-201ENST00000579805 193 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC011824.2-203ENST00000579975 633 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 MIR4776-2-201ENST00000580204 80 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC008759.1-201ENST00000589783 983 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC010487.1-201ENST00000594408 1172 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 VN1R92P-201ENST00000598511 928 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC068790.6-201ENST00000602558 258 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 WISP1-OT1-201ENST00000602893 642 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AL096712.1-201ENST00000614561 159 ntBASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 CNBD1-207ENST00000620844 876 ntAPPRIS ALT2 TSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 AC005972.4-201ENST00000636248 1131 ntTSL 5 BASIC5.9□□□□□ -1.46
TRIM39Q9HCM9 DDAH1-204ENST00000535924 3909 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 PTPRR-204ENST00000440835 2818 ntAPPRIS ALT2 TSL 1 (best) BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 HSPA8P17-201ENST00000427029 1382 ntBASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 CPA3-201ENST00000296046 1795 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 FCHSD2-205ENST00000409853 1867 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
TRIM39Q9HCM9 AC027088.4-201ENST00000611559 1947 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 FHL1-218ENST00000543669 2878 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ZNF107-201ENST00000344930 5174 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 CCDC178-202ENST00000383096 3391 ntAPPRIS ALT2 TSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 BX322639.1-201ENST00000609841 6590 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 SELENOI-205ENST00000613142 8126 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RNU6-500P-201ENST00000362349 107 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RNU6-192P-201ENST00000391253 100 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LYST-AS1-201ENST00000412098 521 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 GSTM3P2-201ENST00000412746 530 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL158840.1-201ENST00000414132 523 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 BX284656.2-201ENST00000414483 498 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC01934-201ENST00000414750 391 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC01318-201ENST00000423593 597 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MTCO3P30-201ENST00000426425 670 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC099677.3-201ENST00000427081 395 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL445928.1-201ENST00000435545 222 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MUPP-201ENST00000438111 566 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 MTND1P34-201ENST00000438556 671 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL035258.1-201ENST00000439450 439 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 RPS7P3-201ENST00000443360 580 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC005518.1-201ENST00000448131 1116 ntTSL 2 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 SKINT1L-203ENST00000453388 749 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 ACA64.1-201ENST00000459171 127 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 CCDC75P1-201ENST00000469247 791 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AL035690.1-201ENST00000490892 383 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC011352.3-201ENST00000505162 593 ntBASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC108727.2-201ENST00000512277 392 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC091819.1-201ENST00000518330 630 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 TMEM68-206ENST00000519784 1009 ntTSL 3 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 AC090692.1-202ENST00000525363 607 ntTSL 4 BASIC5.89□□□□□ -1.47
TRIM39Q9HCM9 OR5M10-201ENST00000526812 1052 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms