Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SYNJ2BP-201ENST00000256366 7015 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 MECOM-202ENST00000433243 3508 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 TRIM51-201ENST00000244891 1329 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
COL4A4P53420 CNTD1-205ENST00000588527 1308 ntTSL 2 BASIC4.72□□□□□ -1.65
COL4A4P53420 OR6C2-203ENST00000641516 1682 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
COL4A4P53420 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL4A4P53420 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
COL4A4P53420 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
COL4A4P53420 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.65
COL4A4P53420 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC4.71□□□□□ -1.65
COL4A4P53420 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.71□□□□□ -1.65
COL4A4P53420 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 OR56B2P-201ENST00000317102 954 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 MFSD13B-201ENST00000420133 1290 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 HMGB3P5-201ENST00000428894 612 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 RPL37P1-201ENST00000432310 284 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 AC007389.2-201ENST00000434630 306 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 IGKV3D-7-201ENST00000443397 384 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
COL4A4P53420 AL031963.1-201ENST00000447644 695 ntTSL 3 BASIC4.71□□□□□ -1.66
COL4A4P53420 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.71□□□□□ -1.66
COL4A4P53420 AC008629.1-202ENST00000504820 525 ntTSL 4 BASIC4.71□□□□□ -1.66
COL4A4P53420 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.71□□□□□ -1.66
COL4A4P53420 WWC2-AS1-201ENST00000511846 404 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 AC005034.4-201ENST00000603612 899 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 AC069200.1-201ENST00000609511 323 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 AC007546.1-201ENST00000619452 559 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 MIR6075-201ENST00000620782 95 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 AL158835.3-201ENST00000625908 565 ntTSL 5 BASIC4.71□□□□□ -1.66
COL4A4P53420 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.71□□□□□ -1.66
COL4A4P53420 BCORP1-203ENST00000513194 5093 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.71□□□□□ -1.66
COL4A4P53420 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 AL355852.1-201ENST00000454081 1771 ntBASIC4.71□□□□□ -1.66
COL4A4P53420 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC4.71□□□□□ -1.66
COL4A4P53420 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 POLR1A-201ENST00000263857 12749 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 TAB3-204ENST00000378932 3698 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC4.71□□□□□ -1.66
COL4A4P53420 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC4.71□□□□□ -1.66
COL4A4P53420 RAB30-212ENST00000533486 9929 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 RNA5SP307-201ENST00000362863 116 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 MFAP5-202ENST00000396549 1195 ntTSL 2 BASIC4.7□□□□□ -1.66
COL4A4P53420 AL590806.1-201ENST00000415818 853 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 CDY14P-201ENST00000431260 1014 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 CDY12P-201ENST00000440679 1015 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 CDY13P-201ENST00000445813 1015 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AC105398.1-201ENST00000446073 402 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 CDY23P-201ENST00000451661 1014 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC4.7□□□□□ -1.66
COL4A4P53420 AP000827.1-201ENST00000527814 258 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 RPL23AP97-201ENST00000568955 471 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 MIR8059-201ENST00000620427 81 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AC244100.1-202ENST00000621554 382 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 AP001002.1-201ENST00000625148 1513 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 USP45-204ENST00000369233 2514 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 AC084357.3-201ENST00000541353 2751 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 ZBTB21-201ENST00000310826 7449 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 INPP4B-201ENST00000262992 3741 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 AL355596.1-201ENST00000565399 3996 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 KCNJ1-202ENST00000324036 2614 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 MUC17-201ENST00000306151 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 SLC2A3P1-201ENST00000519666 1451 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 SSR1P1-201ENST00000407630 814 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.7□□□□□ -1.66
COL4A4P53420 COX6B1P7-201ENST00000430845 235 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.7□□□□□ -1.66
COL4A4P53420 RPEP2-201ENST00000432149 701 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 ARAFP2-201ENST00000440565 559 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 BMS1P22-202ENST00000440946 1160 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 AC112206.1-201ENST00000468416 477 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 RPL7L1P8-201ENST00000469911 741 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 OR7E10P-201ENST00000526420 991 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 OR5BC1P-201ENST00000529327 739 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 FOPNL-208ENST00000575744 565 ntTSL 4 BASIC4.7□□□□□ -1.66
COL4A4P53420 AC053481.4-201ENST00000583164 216 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 AC091953.5-201ENST00000622919 233 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 AC005086.4-201ENST00000623065 213 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC4.7□□□□□ -1.66
COL4A4P53420 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
COL4A4P53420 AP001273.1-201ENST00000624493 3152 ntBASIC4.7□□□□□ -1.66
COL4A4P53420 LINC02456-201ENST00000635615 1323 ntTSL 5 BASIC4.7□□□□□ -1.66
COL4A4P53420 ADAM29-214ENST00000618444 2949 ntAPPRIS P1 TSL 4 BASIC4.7□□□□□ -1.66
COL4A4P53420 PLEKHG7-201ENST00000344636 3868 ntTSL 5 BASIC4.69□□□□□ -1.66
COL4A4P53420 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A4P53420 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC4.69□□□□□ -1.66
COL4A4P53420 OSBPL11-201ENST00000296220 4191 ntAPPRIS P1 TSL 1 (best) BASIC4.69□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 85.4 ms