Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 RN7SKP280-201ENST00000364196 304 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 MT-RNR1-201ENST00000389680 954 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXC9P31274 AC106901.1-201ENST00000425086 698 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AC012497.1-201ENST00000429392 575 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXC9P31274 EEF1A1P1-201ENST00000447052 739 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 SNAP25-AS1-205ENST00000453544 368 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC9P31274 RPS7P7-201ENST00000463499 571 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AC007537.2-201ENST00000472093 511 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AC117430.1-201ENST00000474711 801 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC9P31274 AC020890.1-201ENST00000491837 504 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 RNU6-1334P-201ENST00000516032 105 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 THUMPD3-AS1-215ENST00000521609 793 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC9P31274 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXC9P31274 AP001804.2-201ENST00000533932 910 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.91□□□□□ -1.46
HOXC9P31274 AP000569.1-201ENST00000607953 591 ntTSL 2 BASIC5.91□□□□□ -1.46
HOXC9P31274 OR7M1P-201ENST00000608946 533 ntBASIC5.91□□□□□ -1.46
HOXC9P31274 ATXN3-207ENST00000503767 1315 ntTSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC9P31274 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.91□□□□□ -1.46
HOXC9P31274 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC5.91□□□□□ -1.46
HOXC9P31274 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.91□□□□□ -1.46
HOXC9P31274 RALGAPA1P1-201ENST00000443361 6232 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 SLC35A5-206ENST00000492406 4399 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXC9P31274 DSE-204ENST00000452085 10586 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXC9P31274 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.9□□□□□ -1.46
HOXC9P31274 MACF1-232ENST00000567887 24319 ntAPPRIS P5 TSL 5 BASIC5.9□□□□□ -1.46
HOXC9P31274 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXC9P31274 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXC9P31274 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.46
HOXC9P31274 C1orf100-201ENST00000308105 579 ntAPPRIS P1 TSL 2 BASIC5.9□□□□□ -1.46
HOXC9P31274 AL607077.1-201ENST00000401718 499 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 RNU6-564P-201ENST00000410983 104 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 MTND2P11-201ENST00000423638 648 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 NMNAT1P2-201ENST00000435192 860 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 AL121872.1-202ENST00000435867 308 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXC9P31274 AC114495.1-201ENST00000441274 436 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 AL662889.1-201ENST00000453572 389 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXC9P31274 ATG10-AS1-201ENST00000504846 648 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXC9P31274 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXC9P31274 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 IGHVIII-2-1-201ENST00000518843 291 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXC9P31274 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.9□□□□□ -1.46
HOXC9P31274 AF123462.1-201ENST00000554307 446 ntTSL 3 BASIC5.9□□□□□ -1.46
HOXC9P31274 AC068397.1-201ENST00000560337 531 ntTSL 2 BASIC5.9□□□□□ -1.46
HOXC9P31274 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC5.9□□□□□ -1.46
HOXC9P31274 MIR8059-201ENST00000620427 81 ntBASIC5.9□□□□□ -1.46
HOXC9P31274 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXC9P31274 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXC9P31274 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
HOXC9P31274 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.9□□□□□ -1.47
HOXC9P31274 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC5.9□□□□□ -1.47
HOXC9P31274 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.9□□□□□ -1.47
HOXC9P31274 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.89□□□□□ -1.47
HOXC9P31274 MTRNR2L7-201ENST00000544824 1535 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HOXC9P31274 PRKACB-208ENST00000394839 4200 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC9P31274 ALS2CR12-203ENST00000405148 2013 ntAPPRIS P3 TSL 5 BASIC5.89□□□□□ -1.47
HOXC9P31274 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC9P31274 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.89□□□□□ -1.47
HOXC9P31274 AC025750.1-201ENST00000399891 379 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC9P31274 RPL23AP38-201ENST00000423801 469 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 COX6CP15-201ENST00000426313 211 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC9P31274 UBE2V1P3-201ENST00000439651 417 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 TAB3-AS2-201ENST00000445240 292 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC9P31274 EIF4A2P2-201ENST00000455776 1070 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 AC078828.1-201ENST00000471993 458 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC9P31274 AC135999.1-201ENST00000478962 479 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 RPL35P6-201ENST00000490024 372 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 RPS26P24-201ENST00000497656 331 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC9P31274 AC097478.1-202ENST00000508021 567 ntTSL 4 BASIC5.89□□□□□ -1.47
HOXC9P31274 COL6A4P2-205ENST00000509855 506 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 IGHVIII-47-1-201ENST00000518187 331 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 CARD8-211ENST00000519332 500 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC9P31274 AC013549.2-201ENST00000526953 489 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC9P31274 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC9P31274 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC5.89□□□□□ -1.47
HOXC9P31274 RN7SL600P-201ENST00000581811 299 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 AC093227.2-201ENST00000589357 285 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 RNF138P2-201ENST00000603490 592 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 AC090506.2-201ENST00000624521 419 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.89□□□□□ -1.47
HOXC9P31274 TMEM30CP-203ENST00000637814 1035 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.89□□□□□ -1.47
HOXC9P31274 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC9P31274 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.89□□□□□ -1.47
HOXC9P31274 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC5.89□□□□□ -1.47
HOXC9P31274 AC104118.1-201ENST00000607625 1589 ntBASIC5.89□□□□□ -1.47
HOXC9P31274 IQGAP2-203ENST00000396234 3376 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 IL1R1-202ENST00000409329 1862 ntTSL 5 BASIC5.88□□□□□ -1.47
HOXC9P31274 AKAP9-201ENST00000356239 12471 ntAPPRIS P2 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 ARHGAP18-201ENST00000368149 4462 ntAPPRIS P1 TSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.88□□□□□ -1.47
HOXC9P31274 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.88□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms