Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 RPL26P30-202ENST00000602923 645 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC007423.1-201ENST00000605009 627 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 MIR6133-201ENST00000617057 108 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 PHACTR2P1-202ENST00000636592 773 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AL163152.1-201ENST00000642001 374 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 WAC-209ENST00000428935 1320 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 EIF3E-206ENST00000519030 1324 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 INSIG2-208ENST00000614681 1347 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 ALS2CR12-201ENST00000286190 1769 ntAPPRIS P3 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 MIA3-203ENST00000344922 8142 ntAPPRIS P2 TSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 KCNRG-201ENST00000312942 1527 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC245100.4-204ENST00000635587 1555 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC011155.1-201ENST00000316512 456 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC126755.2-208ENST00000327792 462 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC138969.1-213ENST00000331436 462 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 RNU6-185P-201ENST00000384421 107 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 U3.28-201ENST00000391249 210 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC092111.3-201ENST00000402465 496 ntAPPRIS P1 TSL 2 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 RPS27AP11-201ENST00000402798 447 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 Z86062.1-201ENST00000406773 777 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 OR13Z1P-201ENST00000416141 834 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL109761.1-201ENST00000428689 422 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 RPS24P8-201ENST00000431490 402 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 CCNB1IP1P2-201ENST00000432876 818 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC00484-204ENST00000439438 454 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL359265.1-201ENST00000440296 795 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 SLC25A18P1-201ENST00000449385 454 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 ABCC13-202ENST00000463099 3842 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 RN7SL443P-201ENST00000464331 290 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 ENPP7P9-201ENST00000514456 627 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AP001318.3-202ENST00000528876 509 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC018552.3-201ENST00000567416 561 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 TEX41-238ENST00000604253 709 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC090948.2-201ENST00000607363 564 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC110792.4-201ENST00000609843 298 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL162574.2-201ENST00000614618 657 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC006338.2-201ENST00000616864 791 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 uc_338.9-201ENST00000617424 182 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC073592.7-201ENST00000623659 507 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC091948.2-201ENST00000636510 279 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AL359538.1-201ENST00000453498 1710 ntTSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 AC112198.2-201ENST00000426589 6996 ntBASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC4.88□□□□□ -1.63
PCDHGA1Q9Y5H4 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 AC092376.2-201ENST00000622621 4116 ntBASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 PTPRD-205ENST00000397611 8242 ntTSL 5 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 PTPRD-213ENST00000537002 8224 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 IFI16-203ENST00000359709 2609 ntAPPRIS ALT2 TSL 2 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 XIST-204ENST00000429829 19275 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 C3orf58-202ENST00000441925 3260 ntTSL 2 BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 AC068538.1-201ENST00000376856 336 ntBASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 AC019155.1-201ENST00000382242 574 ntBASIC4.87□□□□□ -1.63
PCDHGA1Q9Y5H4 LY6G5C-210ENST00000383237 674 ntAPPRIS P2 TSL 1 (best) BASIC4.87□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms