Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AC093331.2-201ENST00000520459 677 ntTSL 3 BASIC2.65□□□□□ -1.99
HSPG2P98160 AC010201.1-201ENST00000605051 540 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 SCARNA15.3-201ENST00000626315 122 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 SCARNA4.1-201ENST00000628597 123 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 SLC35E3-202ENST00000398004 17791 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 RAPGEF6-208ENST00000509018 8357 ntAPPRIS P3 TSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 NUP107-201ENST00000229179 6457 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC2.65□□□□□ -1.99
HSPG2P98160 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC2.65□□□□□ -1.99
HSPG2P98160 AC016912.1-201ENST00000432241 545 ntTSL 3 BASIC2.65□□□□□ -1.99
HSPG2P98160 AC104306.1-201ENST00000449702 371 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 AL451050.1-201ENST00000450126 415 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 GAS5-223ENST00000452197 483 ntTSL 3 BASIC2.65□□□□□ -1.99
HSPG2P98160 RPL21P8-201ENST00000465083 535 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 AC090136.1-201ENST00000520009 240 ntBASIC2.65□□□□□ -1.99
HSPG2P98160 LINC02402-201ENST00000550337 1212 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 AL136501.1-201ENST00000555913 790 ntTSL 2 BASIC2.65□□□□□ -1.99
HSPG2P98160 AC135178.3-202ENST00000580537 579 ntTSL 3 BASIC2.65□□□□□ -1.99
HSPG2P98160 MIR4458HG-202ENST00000605918 1057 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC2.65□□□□□ -1.99
HSPG2P98160 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC2.65□□□□□ -1.99
HSPG2P98160 ENPP3-201ENST00000357639 3162 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 PCDH19-201ENST00000255531 7937 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 CLASP1-215ENST00000541377 7909 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 GRIN2A-202ENST00000396573 14450 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 AL672167.1-203ENST00000641299 2975 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HSPG2P98160 LINC01857-201ENST00000429730 492 ntTSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 AL139354.1-201ENST00000554319 645 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 AP005435.3-201ENST00000531260 3198 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 RNF213-220ENST00000582970 21055 ntAPPRIS P2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 OR5K1-201ENST00000332650 1097 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
HSPG2P98160 AL035696.2-201ENST00000407941 709 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 COX5BP7-201ENST00000414780 274 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 AMMECR1LP1-201ENST00000415152 841 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 RPEP2-201ENST00000432149 701 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC093853.1-201ENST00000515689 483 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 RNA5SP73-201ENST00000516744 108 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AC102945.1-201ENST00000522640 407 ntTSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 PCED1B-AS1-208ENST00000551898 359 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 KIF1B-202ENST00000377081 8746 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 AC108750.1-201ENST00000637986 2706 ntAPPRIS P1 TSL 4 BASIC2.64□□□□□ -1.99
HSPG2P98160 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 RFFL-202ENST00000394597 4227 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 ZNF607-202ENST00000395835 4003 ntAPPRIS ALT2 TSL 2 BASIC2.64□□□□□ -1.99
HSPG2P98160 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC2.64□□□□□ -1.99
HSPG2P98160 RNA5SP307-201ENST00000362863 116 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 ENSAP1-201ENST00000392855 326 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 EIF4A2P2-201ENST00000455776 1070 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AF213884.1-201ENST00000488102 463 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AP000563.1-201ENST00000490865 758 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 SOX9-AS1-214ENST00000540802 578 ntTSL 4 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC2.64□□□□□ -1.99
HSPG2P98160 WDR7-OT1-201ENST00000592032 565 ntTSL 4 BASIC2.64□□□□□ -1.99
HSPG2P98160 MIR6852-201ENST00000621699 66 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 AC015804.1-201ENST00000622935 435 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 PRNCR1-201ENST00000635449 12727 ntBASIC2.64□□□□□ -1.99
HSPG2P98160 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 RWDD2B-207ENST00000493196 3094 ntAPPRIS P1 TSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 WNT2B-203ENST00000369686 10879 ntTSL 1 (best) BASIC2.64□□□□□ -1.99
HSPG2P98160 PLA2R1-201ENST00000283243 14371 ntAPPRIS P3 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 RNU1-83P-201ENST00000363426 164 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 RNU4-6P-201ENST00000410804 122 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 LINC01362-201ENST00000419658 338 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 SETP14-201ENST00000497538 873 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 AC055720.1-201ENST00000539552 475 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC2.63□□□□□ -1.99
HSPG2P98160 USP9YP4-201ENST00000424401 1745 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
HSPG2P98160 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC2.63□□□□□ -1.99
HSPG2P98160 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 TRIM51GP-201ENST00000534741 1350 ntBASIC2.63□□□□□ -1.99
HSPG2P98160 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
HSPG2P98160 UBDP1-202ENST00000457888 382 ntBASIC2.63□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 103.8 ms