Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 RPS23P10-201ENST00000416185 486 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 RAD23BP1-201ENST00000421404 1227 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC099336.2-201ENST00000422457 254 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 DPYD-AS1-201ENST00000422980 533 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 AC015971.1-204ENST00000424788 1147 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA3P55318 OR52B5P-201ENST00000435337 951 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 RPL12P46-201ENST00000436610 195 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC245047.2-201ENST00000441060 530 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AP000402.1-201ENST00000446404 540 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 AL606490.1-201ENST00000452266 765 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC234781.3-201ENST00000452540 973 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 IFNWP4-201ENST00000453148 294 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 DDX39BP2-208ENST00000453923 258 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AL389915.2-201ENST00000454576 441 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC099560.2-201ENST00000457554 255 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 IGLV2-34-201ENST00000490007 283 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 PFN1P8-201ENST00000497012 543 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC093864.1-201ENST00000504555 745 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA3P55318 AC017037.1-201ENST00000508460 471 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA3P55318 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC3.36□□□□□ -1.87
FOXA3P55318 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 CARD16-203ENST00000525374 503 ntTSL 3 BASIC3.36□□□□□ -1.87
FOXA3P55318 MORF4L1P3-201ENST00000525966 950 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC3.36□□□□□ -1.87
FOXA3P55318 AC090181.2-201ENST00000602975 672 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AL391358.1-201ENST00000605342 190 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 OR7A19P-201ENST00000608051 733 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 CXADRP3-202ENST00000617265 1100 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 AP006248.2-201ENST00000623309 592 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 OR2L8-201ENST00000623922 939 ntAPPRIS P1 BASIC3.36□□□□□ -1.87
FOXA3P55318 OR52B5P-202ENST00000641118 1110 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 MFSD4BP1-201ENST00000513330 1552 ntBASIC3.36□□□□□ -1.87
FOXA3P55318 RASGRP1-209ENST00000559830 1910 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
FOXA3P55318 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.36□□□□□ -1.87
FOXA3P55318 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC3.36□□□□□ -1.87
FOXA3P55318 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC3.36□□□□□ -1.87
FOXA3P55318 CASC1-204ENST00000395990 2417 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 ALCAM-207ENST00000486979 1818 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 RIMS1-204ENST00000401910 3542 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 ARHGAP42-203ENST00000524892 5685 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 AL138828.1-203ENST00000419926 1570 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 AL049555.1-201ENST00000562834 1933 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 CDY3P-201ENST00000454543 1618 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 RNA5SP388-201ENST00000362584 119 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 RNA5SP513-201ENST00000364648 118 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 ARV1-202ENST00000366658 1170 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 ESCO2-202ENST00000397418 720 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 RPL5P19-201ENST00000404228 893 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 AP002530.1-201ENST00000405705 684 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 RAC1P3-201ENST00000416129 580 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 RPS6P12-201ENST00000432491 726 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 CFL1P1-202ENST00000432948 411 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 RPL7P11-201ENST00000437586 658 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 RPSAP41-201ENST00000439695 860 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AL121917.1-201ENST00000441270 893 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 ABCF2P2-201ENST00000450549 296 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC010733.1-201ENST00000451515 401 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC115618.2-201ENST00000453810 450 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 RN7SL585P-201ENST00000470538 280 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 UBA52P7-201ENST00000486088 380 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 UBE2D3-217ENST00000504211 578 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 SNRPCP2-201ENST00000504370 475 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC100782.1-201ENST00000520778 590 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 ALG9-IT1-201ENST00000531305 684 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC069437.1-201ENST00000551372 512 ntTSL 4 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC009113.2-201ENST00000563182 403 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC013565.1-201ENST00000565938 597 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC005154.1-213ENST00000578572 445 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 SNORD95-201ENST00000579879 68 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC068790.5-201ENST00000602741 355 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC020910.3-201ENST00000603701 874 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AL139041.1-201ENST00000605480 610 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC017076.1-201ENST00000607613 578 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AL135786.2-201ENST00000608422 615 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 OR6R2P-201ENST00000609216 300 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC079395.2-201ENST00000610982 737 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC004825.2-201ENST00000616634 455 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC3.35□□□□□ -1.87
FOXA3P55318 VPS29-212ENST00000621131 1124 ntTSL 3 BASIC3.35□□□□□ -1.87
FOXA3P55318 AC019278.1-201ENST00000623516 479 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 CASC19-264ENST00000641912 1184 ntBASIC3.35□□□□□ -1.87
FOXA3P55318 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC3.35□□□□□ -1.87
FOXA3P55318 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 EPC1-203ENST00000375110 3909 ntTSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 ADAM7-201ENST00000175238 3367 ntAPPRIS P2 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 GPX8-203ENST00000503787 1411 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
FOXA3P55318 NCLP2-201ENST00000416078 1462 ntBASIC3.35□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 72.9 ms