Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 TACC2-207ENST00000369000 3813 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 IGLV3-12-201ENST00000390313 356 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
COL9A1P20849 MDM2-210ENST00000393413 657 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 RNU4-25P-201ENST00000410569 230 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 VAV3-203ENST00000415432 1293 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC00428-201ENST00000415620 227 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 UBE2V1P14-201ENST00000415815 558 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 RPS15AP30-201ENST00000420976 390 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC092832.1-201ENST00000422934 400 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AL031846.1-202ENST00000424436 592 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC01037-201ENST00000427337 424 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC128677.1-201ENST00000436016 442 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 GAPDHP48-201ENST00000436626 961 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 LINC01214-201ENST00000471222 335 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 RPL7P43-201ENST00000478876 753 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AC105919.1-201ENST00000507203 393 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 RNU6-1016P-201ENST00000516689 94 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 RNU6-699P-201ENST00000517081 110 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AP003031.2-204ENST00000527219 567 ntTSL 4 BASIC7.63□□□□□ -1.19
COL9A1P20849 AP003497.1-201ENST00000528472 562 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC026894.1-201ENST00000532930 850 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 AP003031.2-202ENST00000533590 572 ntTSL 4 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 MDM2-233ENST00000545204 398 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC103740.1-202ENST00000558404 542 ntTSL 4 BASIC7.63□□□□□ -1.19
COL9A1P20849 AC087721.1-201ENST00000559959 476 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 SULT1C2P1-202ENST00000562418 459 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 MIR3146-201ENST00000580367 79 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC02079-201ENST00000582518 294 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 MAGOH2P-202ENST00000584384 429 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AC125232.2-201ENST00000592457 143 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AC078899.3-201ENST00000599065 212 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AL138895.2-201ENST00000603019 178 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 AC104662.1-201ENST00000604448 511 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 uc_338.34-201ENST00000617467 174 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 TRPM1-202ENST00000397795 5687 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 IPO11-201ENST00000325324 4356 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 AC025040.2-201ENST00000558657 1852 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 TBCCD1-203ENST00000424280 3058 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 TRIM66-201ENST00000299550 9753 ntAPPRIS ALT2 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 MAP3K13-209ENST00000443863 3025 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 ANAPC1-201ENST00000341068 8262 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 GATAD2B-204ENST00000634544 2342 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 IQUB-201ENST00000324698 2891 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 C20orf194-201ENST00000252032 6869 ntAPPRIS P1 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 FAF2-201ENST00000261942 4515 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 WDR89-201ENST00000267522 1687 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 SAMMSON-203ENST00000641005 2168 ntBASIC7.63□□□□□ -1.19
COL9A1P20849 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 AC068189.1-201ENST00000501164 2632 ntTSL 2 BASIC7.63□□□□□ -1.19
COL9A1P20849 TRPS1-209ENST00000519674 3116 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
COL9A1P20849 CCDC30-202ENST00000342022 3098 ntAPPRIS P2 TSL 5 BASIC7.63□□□□□ -1.19
COL9A1P20849 SERPINA9-205ENST00000448305 1520 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 CFAP61-205ENST00000377306 2017 ntTSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 SP140L-201ENST00000243810 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 CLASP1-202ENST00000397587 7915 ntTSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 ZNF630-202ENST00000409324 2455 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 TMEM108-203ENST00000508711 2470 ntAPPRIS ALT2 TSL 2 BASIC7.62□□□□□ -1.19
COL9A1P20849 LUARIS-201ENST00000436105 2916 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 GIGYF2-201ENST00000373563 5847 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 STC1-201ENST00000290271 3883 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 TMEM59-205ENST00000371348 1911 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 CHD7-203ENST00000525508 4777 ntTSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 SHROOM4-203ENST00000460112 8919 ntTSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 KIAA1217-201ENST00000307544 3281 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 HMGXB4-201ENST00000216106 4047 ntAPPRIS P1 TSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL049634.1-201ENST00000453770 1720 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 HSPE1P11-201ENST00000339579 310 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 WDR7-202ENST00000357574 7213 ntTSL 5 BASIC7.62□□□□□ -1.19
COL9A1P20849 RNU1-55P-201ENST00000365510 158 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
COL9A1P20849 SNORD116-11-201ENST00000383882 92 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 FAUP2-201ENST00000394301 401 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AL445529.1-201ENST00000398713 389 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 DHFRP6-201ENST00000401776 268 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AC023469.1-201ENST00000409243 469 ntTSL 3 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL591848.1-201ENST00000413092 322 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AL162394.1-201ENST00000413271 419 ntTSL 2 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC7.62□□□□□ -1.19
COL9A1P20849 ACTR3BP6-201ENST00000422332 1241 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AL358394.1-201ENST00000422807 535 ntTSL 2 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL158832.1-201ENST00000429661 406 ntTSL 3 BASIC7.62□□□□□ -1.19
COL9A1P20849 AC005083.1-202ENST00000430859 740 ntTSL 2 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL513304.1-201ENST00000432987 359 ntTSL 3 BASIC7.62□□□□□ -1.19
COL9A1P20849 LINC01510-201ENST00000441991 468 ntTSL 3 BASIC7.62□□□□□ -1.19
COL9A1P20849 AL451074.4-201ENST00000447545 470 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AL031736.1-201ENST00000449688 618 ntBASIC7.62□□□□□ -1.19
COL9A1P20849 AC022498.1-201ENST00000449845 696 ntTSL 3 BASIC7.62□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms