Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 ABCB5-203ENST00000406935 1483 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 C4orf36-203ENST00000473559 2306 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 FAM133CP-201ENST00000332869 704 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 SLC30A7-201ENST00000357650 1281 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 RNU4-51P-201ENST00000364206 140 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 RNU6-304P-201ENST00000364855 107 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 SNORA67-201ENST00000384423 137 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC093162.1-201ENST00000419682 124 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 DLGAP5P1-201ENST00000430307 464 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AC096775.1-201ENST00000437724 448 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 ISCA1P2-201ENST00000438679 421 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 BMI1P1-201ENST00000445879 941 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 CASP3P1-201ENST00000446037 609 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 AC083982.1-201ENST00000485679 344 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AC093267.1-201ENST00000489176 961 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 RPS27AP16-201ENST00000492222 470 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 LINC01060-205ENST00000512839 716 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 AC013701.1-201ENST00000522657 465 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 BRD9P1-201ENST00000529855 560 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 AL121594.2-201ENST00000541658 472 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AL161751.1-201ENST00000555636 1044 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC079075.1-201ENST00000559543 878 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC6.24□□□□□ -1.41
COL6A1P12109 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC6.24□□□□□ -1.41
COL6A1P12109 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC090403.1-204ENST00000582893 572 ntTSL 4 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC119868.1-202ENST00000584741 347 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC097467.3-208ENST00000593486 670 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 AC097717.1-230ENST00000597051 738 ntTSL 3 BASIC6.24□□□□□ -1.41
COL6A1P12109 NTAN1P1-201ENST00000603150 646 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 IGLCOR22-2-201ENST00000605398 313 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AC016877.3-201ENST00000606778 504 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AL445423.1-201ENST00000609941 536 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AK6-205ENST00000618980 483 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 RUBCNL-205ENST00000389908 3956 ntAPPRIS P3 TSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 CFAP221-215ENST00000598644 1532 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 AL359715.4-201ENST00000606629 1436 ntBASIC6.24□□□□□ -1.41
COL6A1P12109 AC019197.1-201ENST00000638199 3611 ntTSL 5 BASIC6.24□□□□□ -1.41
COL6A1P12109 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.24□□□□□ -1.41
COL6A1P12109 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL6A1P12109 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
COL6A1P12109 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 LINC02476-201ENST00000426413 1577 ntTSL 2 BASIC6.23□□□□□ -1.41
COL6A1P12109 MBNL2-202ENST00000345429 4669 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 IKZF3-210ENST00000377958 1837 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 TYW3-201ENST00000370867 3430 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 KCNJ1-206ENST00000440599 2539 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 ADAM29-203ENST00000445694 3244 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 OR5T3-202ENST00000313033 969 ntAPPRIS P1 BASIC6.23□□□□□ -1.41
COL6A1P12109 RNU1-43P-201ENST00000365052 165 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC6.23□□□□□ -1.41
COL6A1P12109 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 RNU6-1005P-201ENST00000384519 107 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RNU6-225P-201ENST00000384613 103 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 NUDT19P3-201ENST00000404698 555 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC004415.1-201ENST00000422697 449 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 MTCO2P16-201ENST00000436962 677 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AP000936.3-201ENST00000438127 255 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC6.23□□□□□ -1.41
COL6A1P12109 RPL34P26-201ENST00000445636 354 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 NPM1P39-201ENST00000449818 867 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AL591363.1-201ENST00000450091 483 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 CYCSP42-201ENST00000450823 238 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AC243772.1-201ENST00000451620 410 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 CCNB1IP1P3-201ENST00000454702 829 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC6.23□□□□□ -1.41
COL6A1P12109 AL159163.1-201ENST00000507747 600 ntAPPRIS P1 TSL 5 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC116353.3-201ENST00000511215 249 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AC093755.1-201ENST00000512950 1023 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RN7SKP288-201ENST00000516227 268 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 OR5AZ1P-201ENST00000527448 943 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RAP1B-224ENST00000541216 701 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL6A1P12109 FRMD6-AS2-202ENST00000557625 581 ntTSL 4 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC012181.3-201ENST00000565861 601 ntTSL 4 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC022166.1-201ENST00000567851 581 ntTSL 5 BASIC6.23□□□□□ -1.41
COL6A1P12109 AC011824.2-202ENST00000578602 533 ntTSL 4 BASIC6.23□□□□□ -1.41
COL6A1P12109 MTATP6P3-201ENST00000581686 676 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AC022069.1-201ENST00000582910 658 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 DARS-AS1-211ENST00000595061 720 ntTSL 5 BASIC6.23□□□□□ -1.41
COL6A1P12109 AL161896.1-201ENST00000597248 508 ntTSL 4 BASIC6.23□□□□□ -1.41
COL6A1P12109 AL137072.1-201ENST00000603444 466 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 MTND3P19-201ENST00000603825 345 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 RBM11P1-201ENST00000604951 799 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AL022394.1-201ENST00000606979 292 ntBASIC6.23□□□□□ -1.41
COL6A1P12109 AL031667.3-201ENST00000620124 655 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 88 ms