Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 AC091132.5-202ENST00000587078 501 ntTSL 3 BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 AC133552.5-201ENST00000604266 540 ntBASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 AC016705.1-201ENST00000548231 1891 ntTSL 5 BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 OR2J3-201ENST00000377169 1325 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 DOPEY1-202ENST00000349129 8210 ntAPPRIS P3 TSL 1 (best) BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.91□□□□□ -1.62
PCDHGA1Q9Y5H4 ELF1-204ENST00000625359 2032 ntTSL 2 BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 AC100757.1-201ENST00000616872 1835 ntBASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 PHACTR2P1-201ENST00000605639 1414 ntBASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 ESCO1-204ENST00000622333 1850 ntTSL 2 BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 ASNSP1-201ENST00000518311 1939 ntBASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
PCDHGA1Q9Y5H4 RAD1P1-201ENST00000231383 813 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 OR14C36-201ENST00000317861 939 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 CCNB2P1-201ENST00000399411 1150 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 METTL5-205ENST00000409837 936 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 SVIL-AS1-202ENST00000414457 1243 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 RPL18P10-201ENST00000425606 538 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 HMGB1P26-201ENST00000452520 628 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 snoU13.1-201ENST00000459157 104 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 RN7SL189P-201ENST00000468631 289 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC116562.1-201ENST00000485355 781 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 IGBP1P5-201ENST00000507524 1000 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AP003168.1-201ENST00000530091 307 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 PARP1P2-201ENST00000556806 195 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC055874.1-201ENST00000561458 479 ntTSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC007906.1-201ENST00000568648 510 ntTSL 5 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 PLCE1-AS2-211ENST00000613585 542 ntTSL 5 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 AC139769.3-201ENST00000618383 175 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 CCDC91-201ENST00000381259 2334 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 GHR-202ENST00000357703 4316 ntTSL 5 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 RAG2-201ENST00000311485 2388 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 SLC35A1-201ENST00000369552 1851 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 MTND4P21-201ENST00000453886 1357 ntBASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC02030-201ENST00000492683 1602 ntTSL 5 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 SMC2-203ENST00000374793 5909 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.9□□□□□ -1.63
PCDHGA1Q9Y5H4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 CDC42BPA-204ENST00000366767 9320 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 RC3H1-202ENST00000367694 3775 ntAPPRIS ALT1 TSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 RN7SKP145-201ENST00000363291 303 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 SNORD115-48-201ENST00000364764 76 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 RNU6-603P-201ENST00000411403 107 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AL158073.1-201ENST00000426848 1104 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 CNOT7P1-201ENST00000429006 852 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 FAM53B-AS1-201ENST00000432699 558 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 OR1H1P-201ENST00000448731 937 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC010149.1-201ENST00000455357 571 ntTSL 4 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 FO393415.3-201ENST00000456424 375 ntTSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 APOOP2-201ENST00000461561 539 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 RPL23AP12-201ENST00000467573 473 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 SSR3-208ENST00000496050 579 ntTSL 4 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AF186190.1-201ENST00000517470 480 ntBASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC084880.2-201ENST00000536009 501 ntTSL 3 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 LINC02375-201ENST00000545739 852 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AC018523.2-201ENST00000555531 1221 ntAPPRIS P1 TSL 2 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AL583810.3-201ENST00000555713 584 ntTSL 4 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 MIR7515HG-226ENST00000588330 1055 ntTSL 5 BASIC4.89□□□□□ -1.63
PCDHGA1Q9Y5H4 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 142.4 ms