Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 Y_RNA.20-201ENST00000362479 113 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNA5SP389-201ENST00000362610 115 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNA5SP226-201ENST00000362653 115 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNA5SP161-201ENST00000363871 115 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 Y_RNA.297-201ENST00000364950 91 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNA5SP149-201ENST00000364952 92 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AMELY-202ENST00000383036 621 ntTSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNU6-190P-201ENST00000384154 102 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNU6-48P-201ENST00000384161 107 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 MIR454-201ENST00000390180 115 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNU1-149P-201ENST00000390870 161 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RPL34-201ENST00000394665 529 ntAPPRIS P1 TSL 2 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RPL7P60-201ENST00000397636 735 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC133644.1-201ENST00000398171 937 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 HMGB1P17-201ENST00000403495 628 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 OR4F1P-201ENST00000405102 938 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 HNRNPA3P4-201ENST00000427514 803 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 EIF1P2-201ENST00000428233 350 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC068137.1-201ENST00000429272 584 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 LINC01805-201ENST00000436433 572 ntTSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC231532.1-201ENST00000438584 312 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 NEFMP1-201ENST00000443423 1006 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RPS20P32-201ENST00000456044 356 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 Z83838.1-202ENST00000456225 839 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNU7-180P-201ENST00000459240 63 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL19P-201ENST00000462522 306 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL332P-201ENST00000482163 254 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 DEFB109F-201ENST00000491870 277 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RNU4-77P-201ENST00000516692 156 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 Y_RNA.708-201ENST00000516950 96 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 TRIM51DP-201ENST00000529746 596 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC090458.1-202ENST00000530387 462 ntTSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC026111.1-201ENST00000551090 1195 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 HSBP1P1-201ENST00000555205 166 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC060809.1-201ENST00000559211 564 ntTSL 4 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 MIR3137-201ENST00000577367 75 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 KCTD2-206ENST00000581589 993 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC005154.1-225ENST00000581665 564 ntTSL 4 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC074135.1-201ENST00000594318 581 ntTSL 4 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC016629.2-201ENST00000597341 199 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 BBIP1P1-201ENST00000602999 279 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AP001972.3-202ENST00000603012 375 ntTSL 3 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC005518.2-201ENST00000603254 282 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC073389.2-201ENST00000606726 571 ntTSL 4 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 SNORD58B-201ENST00000607313 66 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 AC009229.3-201ENST00000608056 282 ntBASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 MLLT3-203ENST00000380338 6772 ntAPPRIS P3 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 PDE4DIP-206ENST00000369356 8307 ntAPPRIS P4 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 SLC16A4-210ENST00000541986 2496 ntTSL 2 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 DDX60-201ENST00000393743 6071 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 CD46-203ENST00000354848 3233 ntAPPRIS ALT2 TSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 ESRP1-204ENST00000454170 3482 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 ATF2-203ENST00000392544 1919 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 ADGRL3-205ENST00000506746 4935 ntAPPRIS ALT2 TSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 RERE-203ENST00000400907 2973 ntTSL 5 BASIC7.62□□□□□ -1.19
VPS9D1Q9Y2B5 KLRD1-201ENST00000336164 3258 ntAPPRIS P4 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 OR1M1-202ENST00000641627 2535 ntAPPRIS P1 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 SPATA31A1-201ENST00000377647 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 PXT1-201ENST00000454782 2108 ntAPPRIS P2 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 KIAA1324L-203ENST00000416314 3179 ntAPPRIS P3 TSL 2 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 NCOA4-204ENST00000581486 3549 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 CASP10-201ENST00000272879 2073 ntTSL 2 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AP002364.1-201ENST00000623330 3386 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 PGAP1-201ENST00000354764 11114 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC007012.2-201ENST00000623206 1676 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 ATOX1-203ENST00000521264 4341 ntTSL 2 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 SCG3-201ENST00000220478 3315 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 NXF2B-202ENST00000602195 2322 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 NXF2-202ENST00000625106 2337 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 ARHGAP42P1-201ENST00000507474 1976 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 Y_RNA.39-201ENST00000362620 98 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 RNY4P16-201ENST00000364768 94 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 CREM-214ENST00000395887 849 ntTSL 5 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 ARF4P3-201ENST00000397387 509 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 RPL34P19-201ENST00000415903 342 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 VWC2L-IT1-201ENST00000416430 467 ntTSL 3 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 LINC01980-202ENST00000425195 491 ntTSL 3 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC074257.1-201ENST00000446340 585 ntTSL 4 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC133473.1-201ENST00000455173 299 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SL587P-201ENST00000459853 281 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC117394.1-201ENST00000477323 567 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 CREM-234ENST00000484283 660 ntTSL 5 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 CREM-236ENST00000487763 429 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC112219.1-201ENST00000491567 947 ntTSL 3 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 HMGN1P9-201ENST00000515212 298 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 RN7SKP99-201ENST00000517028 307 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC004477.2-201ENST00000583349 192 ntTSL 3 BASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC015818.6-201ENST00000584274 634 ntBASIC7.61□□□□□ -1.19
VPS9D1Q9Y2B5 AC004832.4-201ENST00000608952 331 ntBASIC7.61□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 78.6 ms