Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 LIN7C-201ENST00000278193 4688 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 RNMT-209ENST00000592764 4108 ntTSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 EQTN-202ENST00000380032 1033 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 AL591363.1-201ENST00000450091 483 ntBASIC4.67□□□□□ -1.66
HTTP42858 RPS11P1-201ENST00000451072 473 ntBASIC4.67□□□□□ -1.66
HTTP42858 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 THRA1/BTR-203ENST00000604191 571 ntTSL 4 BASIC4.67□□□□□ -1.66
HTTP42858 AC092354.2-201ENST00000607786 514 ntBASIC4.67□□□□□ -1.66
HTTP42858 LINC02086-205ENST00000628749 679 ntTSL 5 BASIC4.67□□□□□ -1.66
HTTP42858 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.67□□□□□ -1.66
HTTP42858 ZNF426-201ENST00000253115 7085 ntAPPRIS P3 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC4.67□□□□□ -1.66
HTTP42858 PLCB4-202ENST00000378473 5619 ntAPPRIS ALT1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC4.67□□□□□ -1.66
HTTP42858 RNF19A-205ENST00000519449 4330 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 RDH10-AS1-201ENST00000514599 3261 ntTSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 RBM23-203ENST00000359890 10040 ntAPPRIS P4 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 TTTY21B-201ENST00000421353 307 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 AL139247.1-201ENST00000422768 325 ntBASIC4.67□□□□□ -1.66
HTTP42858 TTTY21-201ENST00000430228 307 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 AL139099.1-201ENST00000497398 403 ntBASIC4.67□□□□□ -1.66
HTTP42858 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 AC090136.1-201ENST00000520009 240 ntBASIC4.67□□□□□ -1.66
HTTP42858 AC002094.2-201ENST00000577850 1121 ntTSL 5 BASIC4.67□□□□□ -1.66
HTTP42858 AC110743.1-201ENST00000584870 478 ntBASIC4.67□□□□□ -1.66
HTTP42858 AL049634.3-201ENST00000604968 457 ntBASIC4.67□□□□□ -1.66
HTTP42858 LMNTD1-202ENST00000413632 1520 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC4.67□□□□□ -1.66
HTTP42858 TIAM2-208ENST00000461783 6981 ntAPPRIS P1 TSL 2 BASIC4.67□□□□□ -1.66
HTTP42858 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 MAP4K4-219ENST00000625522 7458 ntAPPRIS P5 TSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 KIAA0586-201ENST00000261244 4807 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HTTP42858 PLG-203ENST00000366924 1166 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 AL353633.1-201ENST00000458480 382 ntTSL 3 BASIC4.66□□□□□ -1.66
HTTP42858 AC097103.1-201ENST00000512398 273 ntTSL 3 BASIC4.66□□□□□ -1.66
HTTP42858 AC010680.3-201ENST00000604215 520 ntBASIC4.66□□□□□ -1.66
HTTP42858 AL450472.3-201ENST00000615578 367 ntBASIC4.66□□□□□ -1.66
HTTP42858 ZNF555-201ENST00000334241 8557 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HTTP42858 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HTTP42858 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC4.66□□□□□ -1.66
HTTP42858 PCDH15-209ENST00000395433 6942 ntTSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 SLC10A2-201ENST00000245312 3779 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 VANGL1-204ENST00000369510 8647 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 ZNF645-201ENST00000323684 1519 ntAPPRIS P1 BASIC4.66□□□□□ -1.66
HTTP42858 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC4.66□□□□□ -1.66
HTTP42858 AC104306.1-201ENST00000449702 371 ntBASIC4.66□□□□□ -1.66
HTTP42858 AC098799.1-201ENST00000504752 800 ntBASIC4.66□□□□□ -1.66
HTTP42858 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 GSTCD-202ENST00000394728 2416 ntAPPRIS P1 TSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 AC116667.1-201ENST00000604855 2072 ntBASIC4.66□□□□□ -1.66
HTTP42858 AL355488.2-201ENST00000609909 2850 ntBASIC4.66□□□□□ -1.66
HTTP42858 RIF1-201ENST00000243326 15003 ntAPPRIS P3 TSL 1 (best) BASIC4.66□□□□□ -1.66
HTTP42858 CHD8-213ENST00000557364 8137 ntAPPRIS ALT2 TSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 ZNF19-206ENST00000565100 2087 ntTSL 5 BASIC4.66□□□□□ -1.66
HTTP42858 Y_RNA.510-201ENST00000384511 114 ntBASIC4.66□□□□□ -1.66
HTTP42858 SNHG12-207ENST00000475441 444 ntTSL 3 BASIC4.66□□□□□ -1.66
HTTP42858 RN7SL812P-201ENST00000493791 279 ntBASIC4.66□□□□□ -1.66
HTTP42858 RN7SKP141-201ENST00000516167 338 ntBASIC4.66□□□□□ -1.66
HTTP42858 AC016885.1-201ENST00000517796 532 ntTSL 4 BASIC4.66□□□□□ -1.66
HTTP42858 AC026462.4-202ENST00000564331 532 ntTSL 3 BASIC4.66□□□□□ -1.66
HTTP42858 AC140113.4-201ENST00000622087 222 ntBASIC4.66□□□□□ -1.66
HTTP42858 AC016705.2-202ENST00000559008 6878 ntTSL 3 BASIC4.65□□□□□ -1.66
HTTP42858 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HTTP42858 FOCAD-201ENST00000338382 5765 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
HTTP42858 ST7-221ENST00000465133 2155 ntTSL 5 BASIC4.65□□□□□ -1.66
HTTP42858 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC4.65□□□□□ -1.66
HTTP42858 AURKA-208ENST00000395915 2114 ntAPPRIS P1 TSL 1 (best) BASIC4.65□□□□□ -1.66
HTTP42858 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC4.65□□□□□ -1.66
HTTP42858 STAG1-201ENST00000236698 5951 ntTSL 1 (best) BASIC4.65□□□□□ -1.66
HTTP42858 MYO3B-202ENST00000408978 5529 ntAPPRIS P3 TSL 1 (best) BASIC4.65□□□□□ -1.66
HTTP42858 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC4.65□□□□□ -1.66
HTTP42858 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.65□□□□□ -1.66
HTTP42858 AL353681.1-201ENST00000435828 731 ntTSL 3 BASIC4.65□□□□□ -1.66
HTTP42858 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.65□□□□□ -1.66
HTTP42858 ZNF12-203ENST00000404360 4474 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HTTP42858 VEPH1-203ENST00000392833 3979 ntTSL 1 (best) BASIC4.65□□□□□ -1.67
HTTP42858 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.65□□□□□ -1.67
HTTP42858 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC4.65□□□□□ -1.67
HTTP42858 NXPH1-205ENST00000602349 1953 ntBASIC4.65□□□□□ -1.67
HTTP42858 SRGAP3-AS1-201ENST00000414633 428 ntTSL 2 BASIC4.65□□□□□ -1.67
HTTP42858 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.65□□□□□ -1.67
HTTP42858 AC116312.1-201ENST00000606841 314 ntBASIC4.65□□□□□ -1.67
HTTP42858 ITGA9-AS1-218ENST00000630762 751 ntTSL 5 BASIC4.65□□□□□ -1.67
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms