Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 HMBOX1-202ENST00000355231 1694 ntTSL 5 BASIC5.38□□□□□ -1.55
BRCA1P38398 COPB2-205ENST00000507777 3034 ntTSL 2 BASIC5.38□□□□□ -1.55
BRCA1P38398 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.38□□□□□ -1.55
BRCA1P38398 NSD3-206ENST00000527502 4471 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BRCA1P38398 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BRCA1P38398 RPL6P29-201ENST00000414863 865 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 AC114814.2-201ENST00000419195 485 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 NPM1P18-201ENST00000434232 732 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 AC015660.2-201ENST00000561362 323 ntTSL 3 BASIC5.38□□□□□ -1.55
BRCA1P38398 AC127502.1-204ENST00000564861 618 ntTSL 3 BASIC5.38□□□□□ -1.55
BRCA1P38398 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.38□□□□□ -1.55
BRCA1P38398 AC020978.9-201ENST00000624380 1141 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.38□□□□□ -1.55
BRCA1P38398 AC008013.2-202ENST00000637965 364 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 AC092376.2-201ENST00000622621 4116 ntBASIC5.38□□□□□ -1.55
BRCA1P38398 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.38□□□□□ -1.55
BRCA1P38398 CDC16-202ENST00000252458 1991 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BRCA1P38398 PCGF5-204ENST00000543648 7144 ntAPPRIS P1 TSL 2 BASIC5.38□□□□□ -1.55
BRCA1P38398 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
BRCA1P38398 DCX-207ENST00000635795 9163 ntAPPRIS P4 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 PDE1C-203ENST00000396184 8852 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 SRGAP1-207ENST00000631006 8406 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 AC008549.2-201ENST00000333482 706 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 SNORA5.1-201ENST00000384275 131 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 ENSAP1-201ENST00000392855 326 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AP000357.1-201ENST00000409926 1165 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 RNA5SP36-201ENST00000410197 133 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 TPT1P2-201ENST00000413105 503 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 RPS27L-205ENST00000462430 681 ntTSL 2 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC104164.2-201ENST00000496953 495 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 TRIM36-IT1-201ENST00000503723 881 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AC025741.1-201ENST00000506100 544 ntTSL 4 BASIC5.37□□□□□ -1.55
BRCA1P38398 RN7SKP157-201ENST00000516174 282 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 TPT1-AS1-216ENST00000522845 403 ntTSL 3 BASIC5.37□□□□□ -1.55
BRCA1P38398 AP001999.2-201ENST00000529417 389 ntTSL 3 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC076968.1-201ENST00000566418 429 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 ZNF562-205ENST00000587392 583 ntTSL 2 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC011524.1-201ENST00000590167 240 ntTSL 3 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC015802.3-201ENST00000590241 570 ntTSL 4 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC099669.2-201ENST00000616549 437 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AC007342.8-201ENST00000623278 678 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 AL360270.2-201ENST00000562952 5985 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 DMD-205ENST00000359836 7339 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 FRYL-202ENST00000358350 11706 ntAPPRIS P1 TSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 ADNP-202ENST00000371602 6115 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 RPGRIP1-201ENST00000382933 2004 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
BRCA1P38398 MIR133A2-201ENST00000347538 102 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 MIR483-201ENST00000385070 76 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC068533.1-201ENST00000418542 415 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 NOTCH2P1-201ENST00000443481 624 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AL096855.1-202ENST00000444276 439 ntTSL 2 BASIC5.37□□□□□ -1.55
BRCA1P38398 CYCSP24-201ENST00000445119 316 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 ACTR3BP4-201ENST00000503033 1244 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 PANCR-201ENST00000503456 493 ntTSL 5 BASIC5.37□□□□□ -1.55
BRCA1P38398 AC007991.1-201ENST00000522680 631 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 DYNLL1P4-201ENST00000549314 266 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AC027216.1-201ENST00000577726 685 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 AC018816.2-201ENST00000621460 353 ntBASIC5.37□□□□□ -1.55
BRCA1P38398 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 TM4SF18-201ENST00000296059 3852 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 SNORA73.2-201ENST00000364946 201 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.36□□□□□ -1.55
BRCA1P38398 AC079809.1-201ENST00000415468 276 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 OR8F1P-201ENST00000425243 930 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 AC091286.1-201ENST00000431233 461 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 AC104651.2-201ENST00000447549 528 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC5.36□□□□□ -1.55
BRCA1P38398 AC120057.2-201ENST00000571520 271 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 AC011471.1-201ENST00000585766 187 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 AC112230.1-201ENST00000604342 547 ntBASIC5.36□□□□□ -1.55
BRCA1P38398 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
BRCA1P38398 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC5.36□□□□□ -1.55
BRCA1P38398 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC5.36□□□□□ -1.55
BRCA1P38398 MFSD8-201ENST00000296468 4516 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 CALN1-203ENST00000395276 9189 ntAPPRIS P3 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 LINC02389-201ENST00000535058 3546 ntTSL 2 BASIC5.36□□□□□ -1.55
BRCA1P38398 CLUL1-208ENST00000581619 2449 ntTSL 2 BASIC5.36□□□□□ -1.55
BRCA1P38398 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
BRCA1P38398 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.36□□□□□ -1.55
BRCA1P38398 CNTN1-208ENST00000551295 5557 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC5.35□□□□□ -1.55
BRCA1P38398 AL583835.2-201ENST00000435483 500 ntTSL 2 BASIC5.35□□□□□ -1.55
BRCA1P38398 ABCF2P2-201ENST00000450549 296 ntBASIC5.35□□□□□ -1.55
BRCA1P38398 TTTY23B-202ENST00000451467 512 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 TTTY23-201ENST00000452889 512 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
BRCA1P38398 AC008591.1-201ENST00000503616 631 ntTSL 3 BASIC5.35□□□□□ -1.55
BRCA1P38398 AC024958.1-203ENST00000520256 577 ntTSL 2 BASIC5.35□□□□□ -1.55
BRCA1P38398 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.35□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms