Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 SERPINB8-208ENST00000542677 3192 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 INPP5F-208ENST00000637174 3168 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 AC005821.1-203ENST00000577270 3145 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 CLCC1-203ENST00000356970 4803 ntAPPRIS ALT2 TSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 AC091806.1-201ENST00000452690 3000 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 VNN3-211ENST00000509351 1700 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 OR5B21-201ENST00000360374 931 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSX1P28360 RNU5E-1-201ENST00000362477 120 ntBASIC6.6□□□□□ -1.35
MSX1P28360 Y_RNA.193-201ENST00000363979 102 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL158212.2-201ENST00000369391 460 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 OR2W1-201ENST00000377175 1028 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSX1P28360 TRBV25-1-202ENST00000390398 381 ntAPPRIS P1 BASIC6.6□□□□□ -1.35
MSX1P28360 CD209-205ENST00000394161 507 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 ATP5E-203ENST00000395663 697 ntAPPRIS P1 TSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 PSMA6P1-201ENST00000400275 741 ntBASIC6.6□□□□□ -1.35
MSX1P28360 Z85994.1-201ENST00000406912 606 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 RNU2-9P-201ENST00000410194 145 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL357752.1-201ENST00000412817 349 ntBASIC6.6□□□□□ -1.35
MSX1P28360 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 AC012462.2-201ENST00000414756 391 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 LINC01389-201ENST00000420876 483 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 AL451054.2-201ENST00000420896 202 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL356309.1-201ENST00000425153 339 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 RPL5P34-201ENST00000426545 891 ntBASIC6.6□□□□□ -1.35
MSX1P28360 RPL23AP4-201ENST00000427757 463 ntBASIC6.6□□□□□ -1.35
MSX1P28360 RBMY2QP-201ENST00000429799 1147 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC009226.1-201ENST00000432413 539 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 AC019211.1-201ENST00000432993 754 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 ANXA2P2-201ENST00000435128 1020 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL604028.2-201ENST00000437848 788 ntBASIC6.6□□□□□ -1.35
MSX1P28360 HSPE1P28-201ENST00000443139 211 ntBASIC6.6□□□□□ -1.35
MSX1P28360 HIGD1AP8-201ENST00000453927 274 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL583843.1-201ENST00000456070 346 ntBASIC6.6□□□□□ -1.35
MSX1P28360 RPLP0P1-201ENST00000457002 361 ntBASIC6.6□□□□□ -1.35
MSX1P28360 HMGN2P26-201ENST00000463169 339 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC078785.3-201ENST00000476607 425 ntBASIC6.6□□□□□ -1.35
MSX1P28360 RPSAP51-201ENST00000497462 645 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC055733.3-201ENST00000505214 523 ntBASIC6.6□□□□□ -1.35
MSX1P28360 LINC02512-201ENST00000509548 429 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 AC146944.3-201ENST00000509969 371 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC120036.3-201ENST00000517826 292 ntBASIC6.6□□□□□ -1.35
MSX1P28360 IGKV2D-10-201ENST00000520194 281 ntBASIC6.6□□□□□ -1.35
MSX1P28360 IGHVIII-26-1-201ENST00000520387 250 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC009597.1-201ENST00000521215 584 ntTSL 4 BASIC6.6□□□□□ -1.35
MSX1P28360 ST13P6-201ENST00000522430 1102 ntBASIC6.6□□□□□ -1.35
MSX1P28360 SUB1P1-201ENST00000524415 382 ntBASIC6.6□□□□□ -1.35
MSX1P28360 OR5M4P-201ENST00000529436 925 ntBASIC6.6□□□□□ -1.35
MSX1P28360 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC6.6□□□□□ -1.35
MSX1P28360 LINC02386-201ENST00000551202 509 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 HNRNPA1P71-201ENST00000559135 950 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC021483.1-201ENST00000560760 539 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 AC134312.6-201ENST00000568587 444 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC6.6□□□□□ -1.35
MSX1P28360 AC027801.5-201ENST00000574365 416 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 RN7SL667P-201ENST00000582817 298 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC019131.1-201ENST00000583654 622 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 LINC01855-201ENST00000585520 396 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 RPSAP66-201ENST00000592196 606 ntBASIC6.6□□□□□ -1.35
MSX1P28360 COX6CP16-201ENST00000603667 216 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AC007255.2-201ENST00000604053 631 ntBASIC6.6□□□□□ -1.35
MSX1P28360 PRKCQ-AS1-207ENST00000607996 531 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 AC009318.4-201ENST00000620496 486 ntBASIC6.6□□□□□ -1.35
MSX1P28360 AL450226.2-201ENST00000622913 439 ntBASIC6.6□□□□□ -1.35
MSX1P28360 LINC00251-201ENST00000627569 1055 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 AC110079.2-202ENST00000629093 698 ntTSL 3 BASIC6.6□□□□□ -1.35
MSX1P28360 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 GYPE-201ENST00000358615 1684 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 AC079949.2-201ENST00000617117 2933 ntBASIC6.6□□□□□ -1.35
MSX1P28360 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 MTPAP-201ENST00000263063 5601 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 TLR10-201ENST00000308973 3958 ntAPPRIS P1 TSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 LINC02393-202ENST00000614177 1993 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 LINC01958-201ENST00000637749 1941 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 BRDT-202ENST00000362005 3409 ntAPPRIS P3 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 MAPK10-241ENST00000639234 2985 ntTSL 5 BASIC6.6□□□□□ -1.35
MSX1P28360 NRK-201ENST00000243300 8062 ntAPPRIS P1 TSL 1 (best) BASIC6.6□□□□□ -1.35
MSX1P28360 LINC00907-205ENST00000589068 1812 ntTSL 2 BASIC6.6□□□□□ -1.35
MSX1P28360 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 PIK3CB-208ENST00000477593 4658 ntAPPRIS P1 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 NPSR1-AS1-205ENST00000436945 1406 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 PDZD2-202ENST00000438447 11704 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 TRRAP-207ENST00000628380 12644 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 NRXN3-207ENST00000554719 4156 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 SORBS1-207ENST00000371239 2436 ntAPPRIS ALT2 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 TDRKH-201ENST00000368822 3093 ntAPPRIS P2 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 RAI14-208ENST00000506376 3091 ntTSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 TRIP12-201ENST00000283943 9874 ntAPPRIS P3 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 CCR2-204ENST00000445132 2386 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 MUM1L1-201ENST00000337685 4308 ntAPPRIS P1 TSL 3 BASIC6.59□□□□□ -1.35
MSX1P28360 KDM4C-215ENST00000543771 3332 ntTSL 2 BASIC6.59□□□□□ -1.35
MSX1P28360 LRRTM4-205ENST00000409911 2976 ntAPPRIS ALT1 TSL 5 BASIC6.59□□□□□ -1.35
MSX1P28360 ANKRD62P1-201ENST00000434304 1623 ntBASIC6.59□□□□□ -1.35
MSX1P28360 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 ARRDC3-201ENST00000265138 4188 ntAPPRIS P1 TSL 1 (best) BASIC6.59□□□□□ -1.35
MSX1P28360 FAM205C-201ENST00000340783 983 ntAPPRIS ALT2 TSL 4 BASIC6.59□□□□□ -1.35
MSX1P28360 IGKV7-3-201ENST00000357453 298 ntBASIC6.59□□□□□ -1.35
Retrieved 100 of 98,524 protein–RNA pairs in 125.2 ms