Protein–RNA interactions for Protein: Q9NR23

GDF3, Growth/differentiation factor 3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GDF3Q9NR23 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
GDF3Q9NR23 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC20.52■□□□□ 0.88
GDF3Q9NR23 PTBP1P-201ENST00000554374 1601 ntBASIC20.52■□□□□ 0.88
GDF3Q9NR23 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
GDF3Q9NR23 KRT17P1-201ENST00000399211 1546 ntBASIC20.52■□□□□ 0.87
GDF3Q9NR23 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC20.52■□□□□ 0.87
GDF3Q9NR23 CENPS-CORT-204ENST00000602296 1326 ntTSL 3 BASIC20.52■□□□□ 0.87
GDF3Q9NR23 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
GDF3Q9NR23 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 CYP2T3P-201ENST00000601990 817 ntBASIC20.51■□□□□ 0.87
GDF3Q9NR23 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
GDF3Q9NR23 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC20.51■□□□□ 0.87
GDF3Q9NR23 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 AL049812.1-201ENST00000432563 2267 ntBASIC20.5■□□□□ 0.87
GDF3Q9NR23 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 NRN1-204ENST00000622188 1795 ntTSL 2 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 AL158047.1-201ENST00000445918 881 ntBASIC20.5■□□□□ 0.87
GDF3Q9NR23 AP003097.1-201ENST00000530657 1135 ntBASIC20.5■□□□□ 0.87
GDF3Q9NR23 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 AC007613.1-201ENST00000572811 2597 ntBASIC20.5■□□□□ 0.87
GDF3Q9NR23 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC20.5■□□□□ 0.87
GDF3Q9NR23 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
GDF3Q9NR23 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 PEX5L-206ENST00000465751 2147 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 AC142381.4-202ENST00000563973 229 ntBASIC20.49■□□□□ 0.87
GDF3Q9NR23 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 AL356652.1-201ENST00000615962 565 ntBASIC20.49■□□□□ 0.87
GDF3Q9NR23 AL589743.5-201ENST00000616611 1050 ntBASIC20.49■□□□□ 0.87
GDF3Q9NR23 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
GDF3Q9NR23 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
GDF3Q9NR23 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 AUH-202ENST00000375731 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 MCRIP2P1-201ENST00000394346 511 ntBASIC20.48■□□□□ 0.87
GDF3Q9NR23 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
GDF3Q9NR23 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC20.48■□□□□ 0.87
GDF3Q9NR23 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC20.48■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms