Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 AP005212.1-201ENST00000581547 1997 ntBASIC21.81■■□□□ 1.08
VTA1Q9NP79 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 AL512408.1-201ENST00000569378 2000 ntBASIC21.81■■□□□ 1.08
VTA1Q9NP79 AL691432.2-201ENST00000607222 2038 ntBASIC21.81■■□□□ 1.08
VTA1Q9NP79 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC21.81■■□□□ 1.08
VTA1Q9NP79 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC21.81■■□□□ 1.08
VTA1Q9NP79 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC21.81■■□□□ 1.08
VTA1Q9NP79 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 MYC-208ENST00000641036 567 ntBASIC21.81■■□□□ 1.08
VTA1Q9NP79 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
VTA1Q9NP79 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
VTA1Q9NP79 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 LRRC42-203ENST00000371370 2037 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 COPE-203ENST00000351079 907 ntTSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 CD70-202ENST00000423145 881 ntTSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 TSPY5P-201ENST00000426936 936 ntBASIC21.8■■□□□ 1.08
VTA1Q9NP79 SAPCD2P2-201ENST00000431719 1174 ntBASIC21.8■■□□□ 1.08
VTA1Q9NP79 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 PQLC2-202ENST00000375155 1805 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
VTA1Q9NP79 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
VTA1Q9NP79 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 AL162377.1-201ENST00000618844 1793 ntBASIC21.79■■□□□ 1.08
VTA1Q9NP79 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 FGF8-202ENST00000344255 707 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
VTA1Q9NP79 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
VTA1Q9NP79 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 AC007375.3-201ENST00000600936 2314 ntBASIC21.78■■□□□ 1.08
VTA1Q9NP79 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 SOCS2-207ENST00000549206 2072 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC21.78■■□□□ 1.08
VTA1Q9NP79 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
VTA1Q9NP79 MED25-212ENST00000618715 1467 ntTSL 5 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 GGCT-202ENST00000275428 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 AL031432.5-201ENST00000641059 760 ntBASIC21.77■■□□□ 1.08
VTA1Q9NP79 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
VTA1Q9NP79 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.08
VTA1Q9NP79 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.77■■□□□ 1.07
VTA1Q9NP79 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
VTA1Q9NP79 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.1 ms