Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 AL162412.1-201ENST00000567129 965 ntBASIC16.95■□□□□ 0.3
NKX3-1Q99801 CYP2T3P-201ENST00000601990 817 ntBASIC16.95■□□□□ 0.3
NKX3-1Q99801 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 AC073111.5-205ENST00000641717 521 ntBASIC16.95■□□□□ 0.3
NKX3-1Q99801 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 CYP2E1-205ENST00000463117 1912 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 BRSK2-215ENST00000544817 1842 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 PHGDH-210ENST00000641115 1638 ntBASIC16.95■□□□□ 0.3
NKX3-1Q99801 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
NKX3-1Q99801 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
NKX3-1Q99801 WIPF1-205ENST00000409415 1772 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 AP001271.2-201ENST00000624018 1556 ntBASIC16.94■□□□□ 0.3
NKX3-1Q99801 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 KRT17P1-201ENST00000399211 1546 ntBASIC16.94■□□□□ 0.3
NKX3-1Q99801 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 LINC01465-201ENST00000408887 1940 ntBASIC16.94■□□□□ 0.3
NKX3-1Q99801 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC16.94■□□□□ 0.3
NKX3-1Q99801 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
NKX3-1Q99801 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
NKX3-1Q99801 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
NKX3-1Q99801 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
NKX3-1Q99801 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 AC006970.2-201ENST00000450065 779 ntBASIC16.92■□□□□ 0.3
NKX3-1Q99801 AC093787.1-201ENST00000450396 207 ntBASIC16.92■□□□□ 0.3
NKX3-1Q99801 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC16.92■□□□□ 0.3
NKX3-1Q99801 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms