Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AL355385.1-201ENST00000606123 409 ntBASIC21.11■□□□□ 0.97
LRCH3Q96II8 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC21.11■□□□□ 0.97
LRCH3Q96II8 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
LRCH3Q96II8 AC016734.2-201ENST00000624325 1377 ntBASIC21.1■□□□□ 0.97
LRCH3Q96II8 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 CALM3-202ENST00000391918 702 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 STK25-204ENST00000405585 1643 ntTSL 2 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
LRCH3Q96II8 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.1■□□□□ 0.97
LRCH3Q96II8 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 GCSHP2-201ENST00000560971 527 ntBASIC21.09■□□□□ 0.97
LRCH3Q96II8 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 MFSD10-211ENST00000514800 1776 ntTSL 5 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
LRCH3Q96II8 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 TCP11-203ENST00000373974 1689 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
LRCH3Q96II8 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 HLA-A-201ENST00000376802 1334 ntBASIC21.08■□□□□ 0.97
LRCH3Q96II8 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRCH3Q96II8 HLA-G-202ENST00000376815 851 ntBASIC21.08■□□□□ 0.97
LRCH3Q96II8 TRPT1-203ENST00000394547 865 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRCH3Q96II8 MSRB1-202ENST00000399753 847 ntTSL 3 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
LRCH3Q96II8 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
LRCH3Q96II8 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC21.08■□□□□ 0.97
LRCH3Q96II8 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
LRCH3Q96II8 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
LRCH3Q96II8 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.96
LRCH3Q96II8 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 CALM3-211ENST00000598871 561 ntTSL 4 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 HSPB2-C11orf52-202ENST00000534100 1521 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
LRCH3Q96II8 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 RBPJL-203ENST00000372743 1623 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
LRCH3Q96II8 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRCH3Q96II8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRCH3Q96II8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 COPE-201ENST00000262812 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRCH3Q96II8 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
LRCH3Q96II8 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
LRCH3Q96II8 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 BX276092.5-203ENST00000456199 560 ntBASIC21.06■□□□□ 0.96
LRCH3Q96II8 AC091304.2-201ENST00000564639 760 ntBASIC21.06■□□□□ 0.96
LRCH3Q96II8 ANKRD29-202ENST00000585908 846 ntTSL 2 BASIC21.06■□□□□ 0.96
LRCH3Q96II8 AP002414.4-201ENST00000589764 1148 ntBASIC21.06■□□□□ 0.96
LRCH3Q96II8 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms