Protein–RNA interactions for Protein: P61011

SRP54, Signal recognition particle 54 kDa protein, humanhuman

Known RBP Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54P61011 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 AL691432.2-201ENST00000607222 2038 ntBASIC19.2■□□□□ 0.66
SRP54P61011 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 MAN1B1-AS1-201ENST00000596585 1872 ntBASIC19.2■□□□□ 0.66
SRP54P61011 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
SRP54P61011 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SRP54P61011 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SRP54P61011 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.19■□□□□ 0.66
SRP54P61011 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SRP54P61011 NME6-209ENST00000442597 757 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 B3GAT3P1-201ENST00000471720 806 ntBASIC19.19■□□□□ 0.66
SRP54P61011 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.19■□□□□ 0.66
SRP54P61011 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 AL391422.3-201ENST00000603791 2761 ntBASIC19.19■□□□□ 0.66
SRP54P61011 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
SRP54P61011 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC19.19■□□□□ 0.66
SRP54P61011 TRIM74-201ENST00000285805 1350 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 TRIM73-201ENST00000323819 1358 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SRP54P61011 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC19.18■□□□□ 0.66
SRP54P61011 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.18■□□□□ 0.66
SRP54P61011 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC19.18■□□□□ 0.66
SRP54P61011 AC011506.1-201ENST00000474329 610 ntBASIC19.18■□□□□ 0.66
SRP54P61011 ASPHD1-203ENST00000483405 1115 ntAPPRIS ALT2 TSL 3 BASIC19.18■□□□□ 0.66
SRP54P61011 AL031600.3-201ENST00000566287 1124 ntTSL 5 BASIC19.18■□□□□ 0.66
SRP54P61011 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC19.18■□□□□ 0.66
SRP54P61011 GRAMD4P8-201ENST00000605465 1115 ntBASIC19.18■□□□□ 0.66
SRP54P61011 AC073130.3-201ENST00000624389 2278 ntBASIC19.18■□□□□ 0.66
SRP54P61011 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SRP54P61011 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SRP54P61011 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SRP54P61011 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SRP54P61011 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC19.17■□□□□ 0.66
SRP54P61011 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC19.17■□□□□ 0.66
SRP54P61011 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SRP54P61011 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
SRP54P61011 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SRP54P61011 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
SRP54P61011 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.16■□□□□ 0.66
SRP54P61011 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC19.16■□□□□ 0.66
SRP54P61011 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 NAPSB-206ENST00000562112 1266 ntBASIC19.16■□□□□ 0.66
SRP54P61011 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC19.16■□□□□ 0.66
SRP54P61011 AC145285.6-201ENST00000604632 637 ntBASIC19.16■□□□□ 0.66
SRP54P61011 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC19.16■□□□□ 0.66
SRP54P61011 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC19.16■□□□□ 0.66
SRP54P61011 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SRP54P61011 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 110.2 ms